Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0535 ATGGAATTTGTGGAAAGCCAACCTATTATTGTCCGGGCTGAATATGTATTGAAATTTTGCAGGGGATTCAGGAGAAACGGAGAAAGAGACCCCTCCCCAGGGAACGCTGACATTTGCGCGCCTTACGACGCCGACGACCACACATTTTCTTGGCCGCCGCTTCAGCTCCACAATTCGGTTAAGAAGCGAGAACCGGAAGAGAAAGAAGCTGATGATGGTGATGACGAGGATGGAGAAGAACAGGAGGAACTGCAGGTGAAGAGGGGAAAATTCGGAATAGCTAAAATTTCACAATTTCAGTTTGATCACACTGGACCGTTTGAGCCTCTTGTCCTTTCTTCAGATGCAGAAGTTCCAGTCATTCAGGTTCCCGCAACTATAAATTGTAGACTACTTGAGCATCAAAGAGAGGGAGTGAGATTTCTGTATGGTTTGTATAAAAACAATCATGGTGGTATCCTTGGAGATGACATGGGTCTTGGAAAGACCATTCAAGCAATAGCATTTCTTGCTGCTATCTTTGGTAAGGAAAGAGACTCTATGCTGGGTGAAAATGACAAAGAGAAGAGAGACCCTGTATTGATAATCTGTCCRACTTCTGTCATTCATAAYTGGGAGAGTGAGTTCTCTAAATGGGCTAATTTCAGTGTTTCCATTTATCATGGTGCAAACCGGGATCTGATACATGAGAAACTAGAAGCAAATGGAGTGGAGATACTTATTACAAGTTTTGACACTTACAGAATTCACGGAAGTTCCTTGTCAGATTTCGAATGGGGCATTGTRATTGTTGACGAGGCTCACCGGCTTAAGAATGAGAAATCAAAACTCTATAAAGCATGTTTAGAAATTAAAACCCYTAGACGTTATGGTCTTACAGGGACCATAATGCAAAATAAGATAATGGAGTTGTTTAATCTCTTTGACTGGGTTGCACCTGGATCACTTGGGACACGGGAGCACTTTCGYGAGTTCTATGATGAACCCCTTAAACATGGTCAGAGGTCATCTGCTCCTGACAAGTTTGTCCAAATTGCTAATAAAAGAAAACAACACCTTGTGAATGTTCTTCATAAATATTTGTTGAGAAGGACAAAGGAAGAGACAATTGGACATCTTATGATGGGGAAGGAAGATAACATTGTGTTCTGTGCCATGAGTGATTTGCAAAGACGTGTTTACAAGAGAATGTTACAGCTTCCTGATATCCAATGCCTTATAAACAAGGACCTGCCTTGTAGTTGTGGTAGCCCACTTACACAAGTTGAATGTTGTAAGAGGACAGTACCAAATGGAATTATTTGGCCTTACCTTCACCGAGATAACCCTGATGGTTGTGATTCATGCCCTTTCTGCATTGTCCTTCCGTGCCTTGTCAAGCTTCAACAGGTAAGCAATCACCTTGAGCTGATTAAGCCAAACCCCAAAGATGACCCTGAGAAGCAAGGCAAAGATGCAGAGTTTGCTGCTGCTGTCTTTGGCTCTGATATTGATTTGGTTGGCGGAAATATGCAGAGTGAGAGTTTCATGGATCTAAGTGATGTGAAACATTGTGGAAAAATGCGAGCACTTGAAAAACTTCTGTACTCATGGATTTCACATGGTGACAAAGTTCTTTTGTTTAGCTATTCAGTGAGGATGCTTGACATACTGGAGAAATTTCTCATACGGAAAGGCTACTGCTTCTCAAGACTTGATGGGTCTACTCCGACAAATTTGCGCCAGTCTTTAGTTGATGATTTCAACTCCAGTCCTAGCAAACAAGTATTTTTGATATCAACTCGTGCCGGTGGGCTTGGGTTGAACCTTGTCAGCGCAAACCGGGTTGTAATATTTGATCCCAACTGGAATCCTGCACAAGACTTACAGGCCCAGGACAGGTCCTTTCGTTTTGGGCAGAAGCGACATGTTCTGGTGTATAAGCAGCAACTTTCAAACATTGCTGTCTCAGGAAAGATGGAAAAACGATATTTTGAAGGTGTCCAGGACTGCAAAGAATTTCAAGGGGAGCTTTTTGGAATTTGCAATTTATTTCGGGATTTATCTGACGAGCTATTTACTAGTGAAATCATTAAACTGCATGAAATGGGAAAGGAACATCACAATACAATAGAACAGGAAAAAGAAAATCTTTTAGAAGAAACTGATTCTCTAAGATCGGCGTCTGACACTGAAATATGTGCTGGAACTGCAAGCAACGTAGCAAGTAAACCAGATTTTGAAGACCTTGGAATTGTGTATGCTCATCGAAATGAAGACATTGTCAACTGTGGACCTGTGATTCAGGGGAAGATAGATAGCAGCATCCCTTCAAAGAGTGATAGCTTAGTCAAGCCAAGCATCTCTTCAGTCAACCAAAGAAATAAACCAGATTGTGTACCTAAAAAACAGAAAGCTCCTTTGATTGATGAAAGGAAGAGAACCCAATATAGCCTGCTTGCACATTCTATGGGCATGGAAGAGCTTGCATTTAGCAAATGGTTACTATCAGCAACTCCTAAGGAGAGGGAGGAAGTGCTTCGAGACTTCAAGAAGAAAAAGAAGACGCCTAATGGTTAA 2559 0.417 MEFVESQPIIVRAEYVLKFCRGFRRNGERDPSPGNADICAPYDADDHTFSWPPLQLHNSVKKREPEEKEADDGDDEDGEEQEELQVKRGKFGIAKISQFQFDHTGPFEPLVLSSDAEVPVIQVPATINCRLLEHQREGVRFLYGLYKNNHGGILGDDMGLGKTIQAIAFLAAIFGKERDSMLGENDKEKRDPVLIICPTSVIHNWESEFSKWANFSVSIYHGANRDLIHEKLEANGVEILITSFDTYRIHGSSLSDFEWGIVIVDEAHRLKNEKSKLYKACLEIKTXRRYGLTGTIMQNKIMELFNLFDWVAPGSLGTREHFREFYDEPLKHGQRSSAPDKFVQIANKRKQHLVNVLHKYLLRRTKEETIGHLMMGKEDNIVFCAMSDLQRRVYKRMLQLPDIQCLINKDLPCSCGSPLTQVECCKRTVPNGIIWPYLHRDNPDGCDSCPFCIVLPCLVKLQQVSNHLELIKPNPKDDPEKQGKDAEFAAAVFGSDIDLVGGNMQSESFMDLSDVKHCGKMRALEKLLYSWISHGDKVLLFSYSVRMLDILEKFLIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVLVYKQQLSNIAVSGKMEKRYFEGVQDCKEFQGELFGICNLFRDLSDELFTSEIIKLHEMGKEHHNTIEQEKENLLEETDSLRSASDTEICAGTASNVASKPDFEDLGIVYAHRNEDIVNCGPVIQGKIDSSIPSKSDSLVKPSISSVNQRNKPDCVPKKQKAPLIDERKRTQYSLLAHSMGMEELAFSKWLLSATPKEREEVLRDFKKKKKTPNG* 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0535 852 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 62 842 - -
Amo03g0535 852 Coils Coil 701 721 - -
Amo03g0535 852 CDD SF2_C_SNF 514 641 - -
Amo03g0535 852 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 364 IPR027417 -
Amo03g0535 852 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 143 314 IPR014001 -
Amo03g0535 852 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 260 269 IPR002464 -
Amo03g0535 852 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 523 682 IPR001650 -
Amo03g0535 852 SMART helicmild6 549 632 IPR001650 -
Amo03g0535 852 SMART ultradead3 127 322 IPR014001 -
Amo03g0535 852 Pfam SNF2-related domain 147 403 IPR000330 GO:0005524|GO:0140658
Amo03g0535 852 PANTHER SNF2/RAD54 FAMILY MEMBER 62 842 - -
Amo03g0535 852 MobiDBLite consensus disorder prediction 50 84 - -
Amo03g0535 852 Gene3D - 376 724 IPR027417 -
Amo03g0535 852 Pfam Helicase conserved C-terminal domain 520 632 IPR001650 -
Amo03g0535 852 Gene3D - 109 363 IPR038718 -
Amo03g0535 852 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 258 656 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0535 Amo-Chr3 9832709 9839411 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0535 535 673 RAD5 or RAD16-like Gene Family AT1G11100 35.252 1.94e-18 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo03g0535 SNF2_N 8.3e-56 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0535 K20098 - gmx:100781003 1298.11