Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0521 ATGAAAACCCCACCTTCCATGGCTTTGAAAGAAAAGAAGAAGCCCGCCACAAAAAACAAGATCAACGGCACCGTCATTACCAACGATGGCAACAACACTAACAATAAAGAACTTCATTACAGGGGCGTCCGTAAGAGGCCATGGGGCCGTTACGCCGCCGAGATCAGGGATCCGGGGAAGAAGAGCCGCGTCTGGCTCGGAACATTCGACACCGCCGAAGAAGCTGCCATGGCTTATGACGCTGCCGCAAGACAGTTCCGTGGCTCCAAAGCCAAGACCAACTTCCCACTCGCTTCTTCTTCGCCCTCTCCCAACGAAAACGCCAACCTCAACATCAACAAGAATAATAGCGCCGGCGAGAGTCCTAGCCAGAGCAGCACTGTTGAGTCATCAACACCGGAGCGTGAGGTCACGCGCCGCCGCGACGTCSCGGTGATTGAGCGGTTTCCGTTCCTTCCGTTGCAGCAGCCACTTCCGCCGCCGCATCATCAGCTCATGCCGTTTGGCGTYGCCGGCGGTACGGTTGTTGATGGTGTRGTGGCTCCCGTACGGCCGGTTTTCTTTTTAGATCCAACCGTCGGTCGGGCTGAGTTCTTTGGACAAAGCTTTCCCGTACGGTTCGAACCGGGTCCATACGAGATTAGGACCGGGTTTGGAAGTTCGGCACAKAGTGACTCGGATTCTTCCTCCGTCGTTGATTGCCAGCCCAAGAGAGAGCTCAATCTCGATCTCAACCTAGCTCCGCCAATGGATGCTTAA 759 0.5507 MKTPPSMALKEKKKPATKNKINGTVITNDGNNTNNKELHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAMAYDAAARQFRGSKAKTNFPLASSSPSPNENANLNINKNNSAGESPSQSSTVESSTPEREVTRRRDVXVIERFPFLPLQQPLPPPHHQLMPFGVAGGTVVDGVVAPVRPVFFLDPTVGRAEFFGQSFPVRFEPGPYEIRTGFGSSAXSDSDSSSVVDCQPKRELNLDLNLAPPMDA* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0521 252 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Amo03g0521 252 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Amo03g0521 252 MobiDBLite consensus disorder prediction 93 132 - -
Amo03g0521 252 MobiDBLite consensus disorder prediction 1 37 - -
Amo03g0521 252 CDD AP2 39 96 IPR001471 GO:0003700|GO:0006355
Amo03g0521 252 MobiDBLite consensus disorder prediction 93 140 - -
Amo03g0521 252 MobiDBLite consensus disorder prediction 1 18 - -
Amo03g0521 252 SUPERFAMILY DNA-binding domain 39 97 IPR016177 GO:0003677
Amo03g0521 252 Gene3D AP2/ERF domain 39 98 IPR036955 GO:0003700|GO:0006355
Amo03g0521 252 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Amo03g0521 252 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Amo03g0521 252 MobiDBLite consensus disorder prediction 20 37 - -
Amo03g0521 252 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 27 135 - -
Amo03g0521 252 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4-LIKE 27 135 - -
Amo03g0521 252 Pfam AP2 domain 39 88 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0521 Amo-Chr3 9671765 9673033 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0521 32 250 AP2-EREBP Transcription Factor Family AT5G44210 47.748 5.03e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo03g0521 AP2 2.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0521 K09286 - gmx:100801924 214.157