Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0502 ATGCTGATCCTTCAAAATATGGATCATGGAGAACTCTCTAACGCTTTCCCTCATCATCAGAATCAGAATCCAACTACTACTCCTCCTCCTTCTTTGAAGAGGAAGAGAAACCTCCCAGGAAACCCAGATCCGGAAGCGGAAGTAATAGCCTTATCCCCAAAGACACTAATGGCTACAAACAGGTTCTTGTGTGAAACCTGTGGGAAGGGTTTCCAAAGGGATCAAAACCTTCAACTCCATAGAAGAGGACACAACCTTCCATGGAAGCTAAAACAAAGAACAAATAAAGAACCAAAGAAGCGTGTATACGTGTGTCCGGAGAAAACATGTGTCCACAACCACCCTTCAAGGGCTTTGGGAGACTTGACCGGAATCAAGAAGCACTTTTGCCGGAAGCACGGCGAGAAGAAGTGGAAGTGCGACAAATGCTCCAAGCGTTACGCGGTTCAGTCCGACTGGAAAGCCCACTCCAAAACCTGTGGTACAAGAGAATATAAGTGTGATTGTGGAACCATCTTTTCACGGAGGGATAGCTTCATAACTCACAGGGCATTTTGTGACGCATTGGCAGAAGAAACAGCTAGGGTAAATGCAGCATCAAGCATAAACAACTCAACATTAGGGGCTAATAATAATAACAATAACATTATTGGTTACAATAACATGATGATAGGAACCTCCATGGCCCCGCATCATAATAATAATAATAACATGGCAACCCAATTTGCTTCAATTTGCAATAAGCCAATTCCATTCACTGAAGAAGCCACAAATAACCAAACAACAACAAGAGGATTATCCCTTTGGATGGACCATCATCATCATCATCGTCAAGAAGCAACAATGGCTACTAATAACAATAATTACCATCTGAACTGGGTATTCGGATCCAAAATTTCGACCAATCCAAGCCAAGATCTAAGTAGCAACAACACTATTACTAGTACTATTACTACATCGCTTCCAATACTAGGAAGCATTGTTAATGTTCCTTCATTGTATAGCTCACAACATCAACCCCATCAAACATGTGCTTCTTCGTCGTCGGCGAACATGTCGGCGACGGCATTGTTGCAGAAAGCAGCTCAAGTTGGTGCAACCTCAAGTGATCCATCATCATTCTTGGGGGCATTAGGGTTGAAATGCAGCAATGGTAGTGATCAAGGGCAAGATGGGAATAACAATAAGTTTTGTGGGGTGTATGGTTCAAGTTTGGTGCTAACAAGTAGTAGTAATAATATTAATAGAGAGGCAGAGAACAATGAATTGTCACAAATGCACCCTTCAAAGAGGAGACATGTAATGCCGAATGAGGAGAGTGGAGGAGGGCAAACTAGGGATTTCCTTGGTGTTGGGGGTGCAAACCACCATTTGCCACCCTTTATCAACCAAAGCTTGGATTTGATTTGA 1410 0.427 MLILQNMDHGELSNAFPHHQNQNPTTTPPPSLKRKRNLPGNPDPEAEVIALSPKTLMATNRFLCETCGKGFQRDQNLQLHRRGHNLPWKLKQRTNKEPKKRVYVCPEKTCVHNHPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNAASSINNSTLGANNNNNNIIGYNNMMIGTSMAPHHNNNNNMATQFASICNKPIPFTEEATNNQTTTRGLSLWMDHHHHHRQEATMATNNNNYHLNWVFGSKISTNPSQDLSSNNTITSTITTSLPILGSIVNVPSLYSSQHQPHQTCASSSSANMSATALLQKAAQVGATSSDPSSFLGALGLKCSNGSDQGQDGNNNKFCGVYGSSLVLTSSSNNINREAENNELSQMHPSKRRHVMPNEESGGGQTRDFLGVGGANHHLPPFINQSLDLI* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0502 469 MobiDBLite consensus disorder prediction 423 447 - -
Amo03g0502 469 PANTHER F-BOX ASSOCIATED PROTEIN 32 468 - -
Amo03g0502 469 SUPERFAMILY beta-beta-alpha zinc fingers 61 158 IPR036236 -
Amo03g0502 469 Gene3D Classic Zinc Finger 41 115 - -
Amo03g0502 469 MobiDBLite consensus disorder prediction 423 437 - -
Amo03g0502 469 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 32 468 - -
Amo03g0502 469 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Amo03g0502 469 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Amo03g0502 469 MobiDBLite consensus disorder prediction 15 32 - -
Amo03g0502 469 MobiDBLite consensus disorder prediction 1 45 - -
Amo03g0502 469 Gene3D Classic Zinc Finger 131 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0502 Amo-Chr3 9466813 9469465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0502 29 452 IDZ Gene Family AT1G03840 53.118 7.93e-141 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo03g0502 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0502 K25870 - ahf:112767274 785.793