Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0476 ATGCAAAGAAATAACAACGGAATGCATCCAGCATGTGCGGCATGCAAACATCAAAGGAAGAAATGCAGTGAGAATAATTGCATATTAGCCCCTTATTTTCCAGCAAATAGAAGCCGTGAGTTCCATGCAGTGCACAAAGTTTTTGGTGTTAGCAACATAACTAAGTTAGTGAAGAGTGCAAAGGAAGAAGACCGAAGAAGAGTTGTTGACTCATTAATTTGGGAAGCATGTTGTAGGCAAAGAGACCCTATTCATGGTCCTTATGGAGAGTACACAAAAGTTTACAATGAGTATAAGAAAAACAAGAATGAGATTATGGACTCTTCTACTACTATTTATAATGCATATTGTTCAAATTATTTGCATGATTTGGATAATATGATGAGGCAGGAGGTAGTCATCCCCTTTCAGCAGCACTCTCAAACATACTATATTACAGGTTTTCTTGTACAAACCAATGAACCTTGA 468 0.3718 MQRNNNGMHPACAACKHQRKKCSENNCILAPYFPANRSREFHAVHKVFGVSNITKLVKSAKEEDRRRVVDSLIWEACCRQRDPIHGPYGEYTKVYNEYKKNKNEIMDSSTTIYNAYCSNYLHDLDNMMRQEVVIPFQQHSQTYYITGFLVQTNEP* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0476 155 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 120 - -
Amo03g0476 155 Pfam Lateral organ boundaries (LOB) domain 11 106 IPR004883 -
Amo03g0476 155 ProSiteProfiles LOB domain profile. 10 112 IPR004883 -
Amo03g0476 155 PANTHER LOB DOMAIN-CONTAINING PROTEIN 2 3 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0476 Amo-Chr3 8891376 8892939 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0476 9 99 AS2 family AT1G06280 61.538 6.13e-39 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Amo03g0476 LOB 3.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0476 - - vra:106780610 220.32