Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Amo03g0444 | TCTGTTTTGTTCTGCTCTGTTCAACTTGTTCATCAGGGTTTACTGAATTATATTAGTTCCCAGGATGTATGGTGTGGCCCTGGAATTGGACTCACATCAGATCATGCTTCTGCTTCTGTGGATTGTGTGGTGGCAAGGAAAAATGCTTCTTCAAGAAGGAACCTTGATGCTGTTGAGAGAGCAACACATAGGGAAGAGGCTCGAAGTGAGTTGGAGCATAGTCTAATCACTAGTCGTCCACAGCTTCAGTACTATCGAGAGTGCAACAATCTTCATAAACTCTGGGCCCTTCTCAATTTTCTTCTGCCTGAAATTTTTAGCTCTGCTGAAACTTTTGATGAATGGTTCCAAATATCAGAGCGTGATTCCTGGGTCCTGATATTTTCACAGATGACTAGGCTGCTGGACATACTTGAAGATTATTTAATGTTTCAGGGATATCAATATTGTCGTATAGATGGAAACACCCGTGGAGAAGATCGTGATGCTTCCATTGAAGCTTTCAACAAACCAGGAAGTGAGAAATTTGTCTTCTTGTTATCTACTAGGGCTGGAGGTCTCGGCATCTATCATGGCTGTAGCAGTTTGCAGCCAATAAGAGACACTAGAGAGAAGCAGAACACAAAGGTATTTGTAATTGGGCTTGAAGAAGAATTTCCTCTGTTTTCAAATCCTGTAATTGGAAGGTCTCTTACTTATGAAGCTAGAGAAGCATTTCTTTTAGCCTTAGTAGCTGATGGACGTGCTGAGTGGATGGATAAAGGACATAGGAAATGTCTTATTCTCTGGAATCAGATTCAAGAGTGGGCAGAAATTTTAGTACAATTTGCAAGAGATAATGGGCTGGAAGATGGTGTTGTGACGATGGAAGAAATAAGCAAGACCATGGAGCAAGTGAGCAAGAACCAGGCATTAGTAGATGCTATTGGAGAACCAATAGTTAAAGCTCAGGATCGTGCTCATAGGATTGGACAGAAGAAATAA | 984 | 0.4136 | SVLFCSVQLVHQGLLNYISSQDVWCGPGIGLTSDHASASVDCVVARKNASSRRNLDAVERATHREEARSELEHSLITSRPQLQYYRECNNLHKLWALLNFLLPEIFSSAETFDEWFQISERDSWVLIFSQMTRLLDILEDYLMFQGYQYCRIDGNTRGEDRDASIEAFNKPGSEKFVFLLSTRAGGLGIYHGCSSLQPIRDTREKQNTKVFVIGLEEEFPLFSNPVIGRSLTYEAREAFLLALVADGRAEWMDKGHRKCLILWNQIQEWAEILVQFARDNGLEDGVVTMEEISKTMEQVSKNQALVDAIGEPIVKAQDRAHRIGQKK* | 328 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Amo03g0444 | 327 | Pfam | ESCRT-II complex subunit | 215 | 300 | IPR008570 | GO:0000814|GO:0071985 | |
Amo03g0444 | 327 | Pfam | Helicase conserved C-terminal domain | 118 | 189 | IPR001650 | - | |
Amo03g0444 | 327 | Gene3D | - | 263 | 320 | IPR036388 | - | |
Amo03g0444 | 327 | Gene3D | - | 113 | 190 | IPR027417 | - | |
Amo03g0444 | 327 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 86 | 189 | IPR027417 | - | |
Amo03g0444 | 327 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 111 | 300 | IPR001650 | - | |
Amo03g0444 | 327 | PANTHER | ISWI CHROMATIN-REMODELING COMPLEX ATPASE CHR17 | 120 | 190 | - | - | |
Amo03g0444 | 327 | PANTHER | ISWI CHROMATIN-REMODELING COMPLEX ATPASE CHR17 | 89 | 119 | - | - | |
Amo03g0444 | 327 | Gene3D | - | 195 | 262 | IPR014041 | - | |
Amo03g0444 | 327 | PANTHER | SNF2/RAD54 HELICASE FAMILY | 120 | 190 | - | - | |
Amo03g0444 | 327 | PANTHER | SNF2/RAD54 HELICASE FAMILY | 89 | 119 | - | - | |
Amo03g0444 | 327 | SUPERFAMILY | "Winged helix" DNA-binding domain | 195 | 269 | IPR036390 | - | |
Amo03g0444 | 327 | CDD | SF2_C_SNF | 93 | 189 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Amo03g0444 | Amo-Chr3 | 8284420 | 8290191 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Amo03g0444 | 126 | 189 | RAD5 or RAD16-like Gene Family | AT5G43530 | 35.938 | 5.28e-07 | 49.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Amo03g0444 | K12189 | - | gmx:100803388 | 158.303 |