Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0444 TCTGTTTTGTTCTGCTCTGTTCAACTTGTTCATCAGGGTTTACTGAATTATATTAGTTCCCAGGATGTATGGTGTGGCCCTGGAATTGGACTCACATCAGATCATGCTTCTGCTTCTGTGGATTGTGTGGTGGCAAGGAAAAATGCTTCTTCAAGAAGGAACCTTGATGCTGTTGAGAGAGCAACACATAGGGAAGAGGCTCGAAGTGAGTTGGAGCATAGTCTAATCACTAGTCGTCCACAGCTTCAGTACTATCGAGAGTGCAACAATCTTCATAAACTCTGGGCCCTTCTCAATTTTCTTCTGCCTGAAATTTTTAGCTCTGCTGAAACTTTTGATGAATGGTTCCAAATATCAGAGCGTGATTCCTGGGTCCTGATATTTTCACAGATGACTAGGCTGCTGGACATACTTGAAGATTATTTAATGTTTCAGGGATATCAATATTGTCGTATAGATGGAAACACCCGTGGAGAAGATCGTGATGCTTCCATTGAAGCTTTCAACAAACCAGGAAGTGAGAAATTTGTCTTCTTGTTATCTACTAGGGCTGGAGGTCTCGGCATCTATCATGGCTGTAGCAGTTTGCAGCCAATAAGAGACACTAGAGAGAAGCAGAACACAAAGGTATTTGTAATTGGGCTTGAAGAAGAATTTCCTCTGTTTTCAAATCCTGTAATTGGAAGGTCTCTTACTTATGAAGCTAGAGAAGCATTTCTTTTAGCCTTAGTAGCTGATGGACGTGCTGAGTGGATGGATAAAGGACATAGGAAATGTCTTATTCTCTGGAATCAGATTCAAGAGTGGGCAGAAATTTTAGTACAATTTGCAAGAGATAATGGGCTGGAAGATGGTGTTGTGACGATGGAAGAAATAAGCAAGACCATGGAGCAAGTGAGCAAGAACCAGGCATTAGTAGATGCTATTGGAGAACCAATAGTTAAAGCTCAGGATCGTGCTCATAGGATTGGACAGAAGAAATAA 984 0.4136 SVLFCSVQLVHQGLLNYISSQDVWCGPGIGLTSDHASASVDCVVARKNASSRRNLDAVERATHREEARSELEHSLITSRPQLQYYRECNNLHKLWALLNFLLPEIFSSAETFDEWFQISERDSWVLIFSQMTRLLDILEDYLMFQGYQYCRIDGNTRGEDRDASIEAFNKPGSEKFVFLLSTRAGGLGIYHGCSSLQPIRDTREKQNTKVFVIGLEEEFPLFSNPVIGRSLTYEAREAFLLALVADGRAEWMDKGHRKCLILWNQIQEWAEILVQFARDNGLEDGVVTMEEISKTMEQVSKNQALVDAIGEPIVKAQDRAHRIGQKK* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0444 327 Pfam ESCRT-II complex subunit 215 300 IPR008570 GO:0000814|GO:0071985
Amo03g0444 327 Pfam Helicase conserved C-terminal domain 118 189 IPR001650 -
Amo03g0444 327 Gene3D - 263 320 IPR036388 -
Amo03g0444 327 Gene3D - 113 190 IPR027417 -
Amo03g0444 327 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 189 IPR027417 -
Amo03g0444 327 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 111 300 IPR001650 -
Amo03g0444 327 PANTHER ISWI CHROMATIN-REMODELING COMPLEX ATPASE CHR17 120 190 - -
Amo03g0444 327 PANTHER ISWI CHROMATIN-REMODELING COMPLEX ATPASE CHR17 89 119 - -
Amo03g0444 327 Gene3D - 195 262 IPR014041 -
Amo03g0444 327 PANTHER SNF2/RAD54 HELICASE FAMILY 120 190 - -
Amo03g0444 327 PANTHER SNF2/RAD54 HELICASE FAMILY 89 119 - -
Amo03g0444 327 SUPERFAMILY "Winged helix" DNA-binding domain 195 269 IPR036390 -
Amo03g0444 327 CDD SF2_C_SNF 93 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0444 Amo-Chr3 8284420 8290191 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0444 126 189 RAD5 or RAD16-like Gene Family AT5G43530 35.938 5.28e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0444 K12189 - gmx:100803388 158.303