Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0408 ATGGATGAACAGAATGAATTCGAACAAGATTTCAGAGATGAATTTATCGAGGGAGCGTTTTTTTCTGAATCTGATATGTCAGATTATATCCTTGAAGCCGCTTATGCGGTTGACTCCGTGCAAGACATTACATCTTTGAAATTTAGTGAGAATGTTGCGGAGGAAATTGGCAAATACCACTTTTCTACTTTGCATCTTGCATTTGATTTTTATATGAAGTACTCAAAGTCGAAGGGCTTTAGTGCAAGGAAGAGCAAAACCTTCAAGAATAGTAGTGGCGAGATTTACAGACAAATGTTTGTATGCCATAGGCAAGGATTCAGGATGGAGAAATATTACACGATGGAAAAAAGGAAGAAGGAGCCTAGATTGGAAACAAGAACTGGATGTGAAGCCCGAATGGATCATTTTCAAAGGTGTGTAGCACACATGCGCTTTAACGAATTTAATGCTGATTATGAATCTACACGTGGGGTGCCCGTCATGCAAACTTGTATAGAGCTGCTAGAGAGATATGCTGCTGAGTTATACACTCATGAGATATTTCTTTTCTTTCGGCCATTTCTCTCTAGAGCTGGATCAATGCGGGTTCTAAACATAGATAATACTGATGATTGCATAAAGTACATTGTGTGTAAGCATGGGAGGCCCGATTTTATGTGGACCGTTGATTTTTGTCAAGAAGAAATGATCTTTATGTGTACCTGTTTACGAATGGAGTCATTTGGTATTCCCTGCGAACATATTGTAAAAGTAATGGTTGACAGAGACATCCGTGAGATTCCCCGGTCATTGGTATTGGATAGATGGACAAAAAAGGTTAAATCAGCACTCAATGATCCAAGTGGGTTCACCAGGGATGCTGTTGTTATTAGTCGTCAAAGTGCTTTGGTGGAATTTTCTAAACAACTGGCTGCTGTTGCTGCTAAAGTACCAGAGAGATATGAAGAGACACGTGATTTAATTATGGGATTGTACTCATCTTACAAGGCTGCAGACGAAGGAGATAATCAACCTCACTCAGGTGTAGCTAGAAGTAGCAATCCGTATGTGCATCCAACCACTGGAGGCTCAGAACAACCATCTAAGAAGAAGAAGCGGCAACGTTGTAGTGTTTGTCAAATGGAAGGACATAAGAAGACAACATGTCCTTGGCAAAAGGACATTGACAACAACGTTATAGAAAATGAAGCTATCGGTTCGGACGATGGCGACATGTGTACCGAAGCGACGGCTGAGTTAGATAGTGATAGTTAG 1257 0.4065 MDEQNEFEQDFRDEFIEGAFFSESDMSDYILEAAYAVDSVQDITSLKFSENVAEEIGKYHFSTLHLAFDFYMKYSKSKGFSARKSKTFKNSSGEIYRQMFVCHRQGFRMEKYYTMEKRKKEPRLETRTGCEARMDHFQRCVAHMRFNEFNADYESTRGVPVMQTCIELLERYAAELYTHEIFLFFRPFLSRAGSMRVLNIDNTDDCIKYIVCKHGRPDFMWTVDFCQEEMIFMCTCLRMESFGIPCEHIVKVMVDRDIREIPRSLVLDRWTKKVKSALNDPSGFTRDAVVISRQSALVEFSKQLAAVAAKVPERYEETRDLIMGLYSSYKAADEGDNQPHSGVARSSNPYVHPTTGGSEQPSKKKKRQRCSVCQMEGHKKTTCPWQKDIDNNVIENEAIGSDDGDMCTEATAELDSDS* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0408 418 SMART 26again6 232 259 IPR006564 GO:0008270
Amo03g0408 418 MobiDBLite consensus disorder prediction 340 358 - -
Amo03g0408 418 MobiDBLite consensus disorder prediction 333 369 - -
Amo03g0408 418 MobiDBLite consensus disorder prediction 397 418 - -
Amo03g0408 418 ProSiteProfiles Zinc finger SWIM-type profile. 219 257 IPR007527 GO:0008270
Amo03g0408 418 Pfam FAR1 DNA-binding domain 69 149 IPR004330 -
Amo03g0408 418 PANTHER OS03G0181600 PROTEIN 135 320 - -
Amo03g0408 418 PANTHER OS03G0181600 PROTEIN 49 134 - -
Amo03g0408 418 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 135 320 IPR031052 GO:0006355
Amo03g0408 418 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 49 134 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0408 Amo-Chr3 7563607 7567490 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo03g0408 FAR1 4.8e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0408 - - adu:107458210 570.466