Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0393 ATGACGGTCGCTTCTTCACCTTTGACCTTACACGTGCCAAATCAAGCTCTCATTGGTGTTATCTGCAGAAATTTTCCCAATCGAATTCAGCTCCAACCTGCTACTGTCACCAATAAGGATTCTTTGGTCATTGTTTCAATCGCTACAGACGACGCAAAGATGATGTCAAGGTCGTATACAAATCTCTTAGATTTGGCTTCTGGGAATTTCCCGGCAATGGGGAATTCGTTTAAAGAACGGCGGCGGATGCCAAGGGTTATGAGTGTACCTGGGATTGTCACAGAAGTAGATGATGATCAGGCAGTTAGTGTTTCTTCTGATAACCCGTCAACTGTTTCTACAGATAGAATGATCATTGTAGCAAATCAGCTACCTTTAAAAGCAAAGCGACGAGAGGACAACCAAGGTTGGAATTTCAGTTGGAATGAGGATTCCTTGCTTTTACAACTCAAGGATGGACTTCCAGAAGAGATGGAGGTTCTTTATGTTGGATCATTGCGTGTTGACATTGACCCAGCTGAGCAGGATGATGTGTCACAGTATTTGTTGGATAAATTCAAATGTGTTCCTACTTTTCTACCCTCTGATGTTTTGGCAAAGTTTTATGATGGCTTCTGTAAAAGGCAGTTATGGCCACTTTTTCATTACATGTTACCATTTTCAACCGCTAAGAGCCACCGTTTTGATCGATCTTTATGGGAAGCCTATGTGCTAGCAAATAAGCTATTTTTTCAAAAGGTAGTTGAAATAATAAACCCAGAAGATGATTTTATTTGGGTTCATGATTATCATTTGATGGTGCTGCCAACCTTTATAAGAAGGCGCTTTAACAGGGTTAAACTGGGATTTTTCCTGCATAGTCCCTTTCCTTCATCAGAGATATATAGGACTCTTCCTGTCAGGGAGGAGATACTTAAAGCATTACTCAACTCTGATATCATTGGATTCCACACGTTTGACTATGCTCGTCATTTCCTTTCTTGCTGTAGTCGTATGCTGGGTCTGGAGTATCAGTCAAAGAGGGGCTATCTAGGATTGGAATATTATGGAAGGACTATCAGTATTAAGATTATGCCTGTAGGAATTCACATGGGTCGAATTGAAACCGTTATGAAGATGGCAGATGAGGAGTGCAAGGCAAGGGAGCTCAAACAGCAATTTGAAGGGAAAACTATTTTGCTTGGTGTTGATGATATGGACATTTTTAAAGGAATTAATTTGAAGATTTTGGCTATGGAGCAAATGCTCAAACAACACCCCAAATGGCAAGGAAGAGCTGTTCTGGTCCAGGTTGTAAATCCTGCAAGGGGAAAAGGGATACATCTAGATGAGATACGTGCTGAAATAGAAGAAAGCTGCAGCAGGATTAACAGAATGTATGGACGGCCTGGTTATGAACCAATTATTTTTATTGATAGATCAGTTTCAGTTGCTGAAAAGGTTGCCTATTACAGCCTTGCTGAGTGTGTTATTGTCACAGCTGTGAGAGATGGGATGAATCTAACTCCTTATGAATATATTGCTTGTAGACAGGGAATATCTGGTAATGGTTCATGTTCCGATATTACAAGCCCAAAGAAGAGTATGTTAGTAATATCAGAATTTATTGGGTGTTCTCCATCACTCAGTGGGGCTATACGTGTCAATCCATGGAATGTTGAGGCCACTGCAGAGGCAATGAACGAGGCTATCTCAATGAGTGATGGAGAGAAGCAGTTGCGGCATGAAAAGCACTACCGGTATGTTAGCACACATGATGTAGCATATTGGTCACGTAGTTTCTTGCAGGACATGGAGAGGGCTTGCGCTGACCTTCTAAGAAAAAGATGTTGGGGAATTGGTCTTAGTTTTGGATTTAGAGTTGTAGCACTTGACCCAAATTTTCGTAAGCTCTCAATTGATGCTATGGTTTCATCTTACAAGAGGGCAAGGAGTAGGGCCATTTTGTTGGACTATGATGGTACGGTGATGCCACAGAATTCCATTAATAAGAGTCCAAGCAATGAGGTTATCTCTCTTTTGGACACGCTTTGTGCGGACCCGAGAAATGTAGTTTTCATTGTTAGCGGGAGGGGGAGGAATAGCTTAAGTGATTGGTTCTTACCCTGCAAAAATCTGGGAATTGCCGCAGAACATGGTTACTTTTTGAGATGGTCGCAAAGTGCACAATGGGAAATTTGTGGTAAGAACATGGACTTTGGATGGATGCAGATTGCTGAACCCGTGATGAAACTCTACACAGAGGCAACTGATGGTTCCAACATTGAAACAAAGGAAAGTGCTTTGGTCTGGCAATACCGGGACGCAGATCTTGGTTTCGGATCTTCTCAAGCTAAGGAAATGTTGGATCATCTAGAAAGTGTTTTAGCCAATGAGCCCGTTGCCGTGAAGAGTGGCCAGTTCATTGTTGAAGTAAAACCCCAGGATGTGAGCAAAGGCTTAGTTGCCGAAAGGATATTTTCATCAATGGCAGAGAATGGCAAACAGGCTGATTTTGTGTTGTGTGTTGGTGATGATAGATCAGATGAAGACATGTTTGAAATAATCAGTAGTTCAATCTCAAGAAATATTCTTTCAGCCAATTCTTCTGTATTTGCCTGCACAGTTGGACAAAAACCAAGCAAAGCTAAGTATTATCTGGATGATACTACTGAAGTAATAAGCATGCTTGAATCTTTGGCAGAAGAATCAGATTCTTCACCCGACTTAGAAGAAATTGGAGATTCTTTTCAAAGGCAAGTGAGATTATGA 2751 0.4133 MTVASSPLTLHVPNQALIGVICRNFPNRIQLQPATVTNKDSLVIVSIATDDAKMMSRSYTNLLDLASGNFPAMGNSFKERRRMPRVMSVPGIVTEVDDDQAVSVSSDNPSTVSTDRMIIVANQLPLKAKRREDNQGWNFSWNEDSLLLQLKDGLPEEMEVLYVGSLRVDIDPAEQDDVSQYLLDKFKCVPTFLPSDVLAKFYDGFCKRQLWPLFHYMLPFSTAKSHRFDRSLWEAYVLANKLFFQKVVEIINPEDDFIWVHDYHLMVLPTFIRRRFNRVKLGFFLHSPFPSSEIYRTLPVREEILKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYQSKRGYLGLEYYGRTISIKIMPVGIHMGRIETVMKMADEECKARELKQQFEGKTILLGVDDMDIFKGINLKILAMEQMLKQHPKWQGRAVLVQVVNPARGKGIHLDEIRAEIEESCSRINRMYGRPGYEPIIFIDRSVSVAEKVAYYSLAECVIVTAVRDGMNLTPYEYIACRQGISGNGSCSDITSPKKSMLVISEFIGCSPSLSGAIRVNPWNVEATAEAMNEAISMSDGEKQLRHEKHYRYVSTHDVAYWSRSFLQDMERACADLLRKRCWGIGLSFGFRVVALDPNFRKLSIDAMVSSYKRARSRAILLDYDGTVMPQNSINKSPSNEVISLLDTLCADPRNVVFIVSGRGRNSLSDWFLPCKNLGIAAEHGYFLRWSQSAQWEICGKNMDFGWMQIAEPVMKLYTEATDGSNIETKESALVWQYRDADLGFGSSQAKEMLDHLESVLANEPVAVKSGQFIVEVKPQDVSKGLVAERIFSSMAENGKQADFVLCVGDDRSDEDMFEIISSSISRNILSANSSVFACTVGQKPSKAKYYLDDTTEVISMLESLAEESDSSPDLEEIGDSFQRQVRL* 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0393 916 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 648 850 IPR006379 -
Amo03g0393 916 Pfam Trehalose-phosphatase 649 883 IPR003337 GO:0003824|GO:0005992
Amo03g0393 916 Gene3D Glycogen Phosphorylase B; 109 369 - -
Amo03g0393 916 Gene3D - 774 905 IPR023214 -
Amo03g0393 916 Gene3D - 645 748 IPR023214 -
Amo03g0393 916 Gene3D Glycogen Phosphorylase B; 370 583 - -
Amo03g0393 916 CDD GT20_TPS 116 599 IPR001830 GO:0003824|GO:0005992
Amo03g0393 916 TIGRFAM T6PP: trehalose-phosphatase 643 894 IPR003337 GO:0003824|GO:0005992
Amo03g0393 916 Pfam Glycosyltransferase family 20 116 599 IPR001830 GO:0003824|GO:0005992
Amo03g0393 916 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 116 602 - -
Amo03g0393 916 CDD HAD_TPP 647 886 - -
Amo03g0393 916 MobiDBLite consensus disorder prediction 896 916 - -
Amo03g0393 916 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING), TREHALOSE-PHOSPHATASE-RELATED 54 906 - -
Amo03g0393 916 SUPERFAMILY HAD-like 646 894 IPR036412 -
Amo03g0393 916 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 54 906 IPR001830 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0393 Amo-Chr3 7300158 7306156 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0393 54 900 Trehalose Biosynthesis Gene Families AT1G06410 77.450 0.0 1384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0393 K16055 - gmx:100800847 1573.53