Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0385 ATGAGCAACAATTATTTCATGCCTTTGCCTGGGTCTCGCAGAACAAGTAGTGATACAAGAGCATTTAATGTTTACACTTTTGATAATACTGATTCCAATGACGTGCCTGTGTATTACAGATCTCGCTCTAACCATAACACTGGTAACAGGAATTCAGGTGTGATAGATCCAAGGAGGGTGTGGGAAAGCAGAAGTCCATCATCAGGACGCCACACTGCTCCAAATTTTGAAGCACAACCAAATAACAGGCAACAATTTCATTTTAATAATGGCGAGATAGGAAGGGGCTCAAACCCTAGGTTCAGAGATATTTTTCGGCAATCACCGCCACGAACCGCAACAACCAGAGAGATTCCCCCACAAGTAGAAAATTCTGAGTCAATGGCTCTTAGCAAGCTCAAGAAAGAAGTCTACAACCCCGTGCCAAAGCGGCTAGCCCGGAGGCTCAGCCTATACTACAGAGGCGACAACAACAACGGGTCAAATGGTGTTCGAGAAAGGGAGAAAGACAAGGATGAAGAAGGTAAGAGTTGTGCTGTTTGCTTGGAAGATTTTGAGGCAAAAGAAGAAGTTATGGTGACACCATGTAACCACATGTTCCATGAGGAATGCATAGTGCCTTGGGTAACAAGCAAAGGACAGTGCCCAGTTTGTAGGTTTGTGATAATTGAGAGAGTTAGAGGGAACCTTTACCCTTCTTCATTCAATAGCAGTAACATTGCAAATATGGAACCAAGTGAACTAATTGCTGGTGAGCTTTTGTCAATTTTGAGCGCCATGGAAGAAGCTTTTCAGTTGGGGAATGGAATGTACTAG 816 0.4363 MSNNYFMPLPGSRRTSSDTRAFNVYTFDNTDSNDVPVYYRSRSNHNTGNRNSGVIDPRRVWESRSPSSGRHTAPNFEAQPNNRQQFHFNNGEIGRGSNPRFRDIFRQSPPRTATTREIPPQVENSESMALSKLKKEVYNPVPKRLARRLSLYYRGDNNNGSNGVREREKDKDEEGKSCAVCLEDFEAKEEVMVTPCNHMFHEECIVPWVTSKGQCPVCRFVIIERVRGNLYPSSFNSSNIANMEPSELIAGELLSILSAMEEAFQLGNGMY* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0385 271 MobiDBLite consensus disorder prediction 66 92 - -
Amo03g0385 271 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 4 268 - -
Amo03g0385 271 Pfam Ring finger domain 177 219 IPR001841 -
Amo03g0385 271 CDD RING-H2_PA-TM-RING 178 219 - -
Amo03g0385 271 SMART ringv_2 177 219 IPR011016 GO:0008270
Amo03g0385 271 SMART ring_2 178 218 IPR001841 -
Amo03g0385 271 ProSiteProfiles Zinc finger RING-type profile. 178 219 IPR001841 -
Amo03g0385 271 MobiDBLite consensus disorder prediction 60 116 - -
Amo03g0385 271 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 4 268 - -
Amo03g0385 271 SUPERFAMILY RING/U-box 168 225 - -
Amo03g0385 271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 229 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0385 Amo-Chr3 7105034 7107961 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0385 124 268 C3H Transcription Factor Family AT3G58720 51.370 2.54e-46 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0385 - K19041 aip:107630161 534.258