Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0384 ATGCAGATTTTTGTCAAGACTTTGACAGGGAAGACCATAACACTAGAGGTGGAATCCTCTGATACCATTGACAATGTGAAAGCTAAGATTCAGGACAAGGAGGGCATTCCACCAGATCAGCAGAGGCTCATCTTTGCCGGTAAGCAGCTTGAAGATGGAAGGACGCTTGCAGATTACAATATTCAGAAGGAGTCCACTTTACATTTGGTGTTGCGGCTCCGTGGTGGCATGCAAATCTTTGTCAAGACACTAACCGGAAAGACAATAACCCTGGAGGTCGAATCTTCGGACACAATTGACAATGTCAAAGCAAAAATCCAAGACAAAGAGGGTATCCCACCTGACAGCAGAGACTTATCTTTGCTGGTAAGCAGTTGGAGGATGGAAGGACCCTTGCTGATTACAACATTCAGAAGGAGTCCACCTTGCATCTTGTTTTGCGACTCCGAGGTGGAATGCAAATCTTTGTCAAGACCTTGA 480 0.4542 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDSRDLSLLVSSWRMEGPLLITTFRRSPPCILFCDSEVECKSLSRP* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0384 159 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Amo03g0384 159 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Amo03g0384 159 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Amo03g0384 159 Pfam Ubiquitin family 79 116 IPR000626 GO:0005515
Amo03g0384 159 SMART ubq_7 77 150 IPR000626 GO:0005515
Amo03g0384 159 SMART ubq_7 1 72 IPR000626 GO:0005515
Amo03g0384 159 PANTHER - 1 118 - -
Amo03g0384 159 PANTHER UBIQUITIN 1 118 - -
Amo03g0384 159 PRINTS Ubiquitin signature 11 31 IPR019956 -
Amo03g0384 159 PRINTS Ubiquitin signature 53 74 IPR019956 -
Amo03g0384 159 PRINTS Ubiquitin signature 32 52 IPR019956 -
Amo03g0384 159 CDD Ubl_ubiquitin 1 76 - -
Amo03g0384 159 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Amo03g0384 159 ProSiteProfiles Ubiquitin domain profile. 77 133 IPR000626 GO:0005515
Amo03g0384 159 SUPERFAMILY Ubiquitin-like 76 120 IPR029071 -
Amo03g0384 159 Gene3D - 1 76 - -
Amo03g0384 159 Gene3D - 77 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0384 Amo-Chr3 7103563 7104932 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0384 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 3.17e-50 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0384 - K08770 bdi:104585556 255.758