Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0374 ATGGTGAAGTACTCCAGAGAACCCGTAAATCCCACCAAGTCTTGCAAGGCTAGAGGCTCTGATTTGAGGGTTCATTTCAAGAACACTAGGGAGACTGCCTTTGCTATCAGGAAGTTGCCGCTTGTTAAGGCAAAGAGGTATTTGGAGGATGTTTTGGCCCACAAACAGGCCATTCCATTCCGACGCTTCTGTGGTGGTGTTGGGAGGACTGCCCAGGCAAAGAACAGACATTCCAATGGACAAGGACGCTGGCCTGTAAAATCAGCTAACTTCATCCTTGATTTGCTCAAGAATGCTGAGAGCAATGCTGAGGTGAAAGGTTTGGATGTGGATGCTCTTTACATTTCCCACATCCAAGTCAACCAAGCACAGAAACAAAGACGCCGCACCTACCGTGCTCACGGAAGAATCAATCCCTACATGTCATCTCCCTGCCACATAGAGTTGATCTTATCCGAGAAGGAAGAGCCTGTTAAGAAAGAGCCGGAGTCCCAGTTGGCAACAAGCAAGAAGTCTCAAGGCCTTCGTAGTGGTGCTTCATCCTAA 546 0.4835 MVKYSREPVNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSANFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPESQLATSKKSQGLRSGASS* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0374 181 MobiDBLite consensus disorder prediction 167 181 - -
Amo03g0374 181 Gene3D Ribosomal protein L22/L17 1 179 IPR036394 GO:0003735|GO:0005840|GO:0006412
Amo03g0374 181 PANTHER 60S RIBOSOMAL PROTEIN L17 1 181 IPR005721 GO:0003735|GO:0006412|GO:0015934
Amo03g0374 181 ProSitePatterns Ribosomal protein L22 signature. 127 151 IPR018260 GO:0003735|GO:0005840|GO:0006412
Amo03g0374 181 PANTHER 60S RIBOSOMAL PROTEIN L17-2-LIKE 1 181 - -
Amo03g0374 181 SUPERFAMILY Ribosomal protein L22 1 154 IPR036394 GO:0003735|GO:0005840|GO:0006412
Amo03g0374 181 CDD Ribosomal_L22 15 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Amo03g0374 181 Pfam Ribosomal protein L22p/L17e 17 152 IPR001063 GO:0003735|GO:0005840|GO:0006412
Amo03g0374 181 MobiDBLite consensus disorder prediction 155 181 - -
Amo03g0374 181 TIGRFAM uL22_arch_euk: ribosomal protein uL22 4 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0374 Amo-Chr3 6934455 6936625 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0374 1 181 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 86.188 3.26e-114 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0374 K02880 - gmx:100816536 340.117