Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0370 AGCCTCCGCGAAGAAGAAGAACAAGCTGCAGTCGACGCCATGGTGAAGTACTCCAGAGAACCCGTAAATCCCACCAAGTCTTGCAAGGCTAGAGGCTCTGATTTGAGGGTTCATTTCAAGAACACTAGGGAGACTGCCTTTGCTATCAGGAAGTTGCCGCTTGTTAAGGCAAAGAGGTATTTGGAGGATGTTTTGGCCCACAAACAGGCCATTCCATTCCGACGCTTCTGTGGTGGTGTTGGGAGGACTGCCCAGGCAAAGAACAGACATTCCAATGGACAAGGACGCTGGCCTGTAAAATCAGCTAAATTCATCCTTGATTTGCTCAAGAATGCTGAGAGCAATGCTGAGGTGTTTGGATGTGGATGCTCTTACATTTCCCACATCCAAGTCAACCAAGCACAAAAACAAAGACGCCGCACCTACCGTGCTCACGGAAGAATCAATCCCTACATGTCATCTCCCTGCCACATAGAGTTGATCTTATCCGAGAAGGAAGAGCCTGTTAAGAAAGAGCCGGAGTCCCAGTTGGCAACAAGTAAGAAATCTCAAGGCCTTCGTAGTGGTGCTTCATCCTAA 579 0.4853 SLREEEEQAAVDAMVKYSREPVNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVFGCGCSYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPESQLATSKKSQGLRSGASS* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0370 192 TIGRFAM uL22_arch_euk: ribosomal protein uL22 17 165 IPR005721 GO:0003735|GO:0006412|GO:0015934
Amo03g0370 192 ProSitePatterns Ribosomal protein L22 signature. 138 162 IPR018260 GO:0003735|GO:0005840|GO:0006412
Amo03g0370 192 MobiDBLite consensus disorder prediction 166 192 - -
Amo03g0370 192 PANTHER 60S RIBOSOMAL PROTEIN L17-2-LIKE 14 192 - -
Amo03g0370 192 Pfam Ribosomal protein L22p/L17e 30 163 IPR001063 GO:0003735|GO:0005840|GO:0006412
Amo03g0370 192 MobiDBLite consensus disorder prediction 178 192 - -
Amo03g0370 192 PANTHER 60S RIBOSOMAL PROTEIN L17 14 192 IPR005721 GO:0003735|GO:0006412|GO:0015934
Amo03g0370 192 SUPERFAMILY Ribosomal protein L22 14 165 IPR036394 GO:0003735|GO:0005840|GO:0006412
Amo03g0370 192 Gene3D Ribosomal protein L22/L17 14 190 IPR036394 GO:0003735|GO:0005840|GO:0006412
Amo03g0370 192 CDD Ribosomal_L22 28 162 IPR001063 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0370 Amo-Chr3 6913071 6914943 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0370 14 192 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 82.320 3.42e-106 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0370 K02880 - gmx:100499784 322.013