Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0336 ATGGCTTCCCGGGAAAGCACTAACTGGCTTTTCGATTACGCTTTGATTGACGATATTCCCGTCCACGATGCCACTTTCGCTGCTCCTTCCGCCGGTTTCAATTGGCCTTCCAACGCCATCAATGGTTCTTCAAATGTCGGTGTTGAAATTGATGGCTCGTTGGGCGATTCTGATGGAATCAAAGAATCTGGTTCAAAGAAAAGGGGCAGATCTGAGTCGTGTGCTCCTTCTAGCTCCAAGGCATGTAGGGAGAAATTGCGGAGGGATAGGCTTAATGACAAGTTTGTTGAATTAGGCTCCATTTTGGAGCCTGGAAGGCCTCCTAAAACTGACAAGGCTGCTATTCTGATTGATGCCGTCAGAATGGTGACACAATTACGGGGCGAAGCCCAAAAGTTGAAAGATTCAAATATGGGTCTACAAGAAAAGATTAAAGAGCTGAAGTCTGAGAAGAATGAACTTCGTGACGAGAAACAGAGACTCAAGGCAGAGAAAGAAAAGTTGGAGCAGCAGCTGAAATCTATGAGTGCTCAACCTAGTTTCATGGCGCCTCCTACTGCGATCCCTGCTGCATTTGCTCCTCAAGGTCAAGTCCCCGGCAACAAGCTGGTTCCTATCATCAGCTATCCAGGAGTGGCAATGTGGCAATTCATGCCCCCTGCTGCAGTTGATACCTCGCAGGATCATGTACTCCGCCCACCAGTTGCCTAA 711 0.481 MASRESTNWLFDYALIDDIPVHDATFAAPSAGFNWPSNAINGSSNVGVEIDGSLGDSDGIKESGSKKRGRSESCAPSSSKACREKLRRDRLNDKFVELGSILEPGRPPKTDKAAILIDAVRMVTQLRGEAQKLKDSNMGLQEKIKELKSEKNELRDEKQRLKAEKEKLEQQLKSMSAQPSFMAPPTAIPAAFAPQGQVPGNKLVPIISYPGVAMWQFMPPAAVDTSQDHVLRPPVA* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0336 236 Gene3D arf6 gtpase in complex with a specific effector, jip4 125 179 - -
Amo03g0336 236 CDD bHLH_AtILR3_like 80 155 - -
Amo03g0336 236 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 236 - -
Amo03g0336 236 Pfam Helix-loop-helix DNA-binding domain 79 126 IPR011598 GO:0046983
Amo03g0336 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983
Amo03g0336 236 Coils Coil 123 178 - -
Amo03g0336 236 Gene3D - 63 124 IPR036638 GO:0046983
Amo03g0336 236 SMART finulus 81 132 IPR011598 GO:0046983
Amo03g0336 236 PANTHER BHLH TRANSCRIPTION FACTOR 1 236 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Amo03g0336 236 MobiDBLite consensus disorder prediction 51 83 - -
Amo03g0336 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 78 145 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0336 Amo-Chr3 6263620 6266434 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0336 1 236 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 71.130 2.03e-113 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo03g0336 HLH 4.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0336 - - gmx:100788858 382.874