Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0318 ATGGATTCATCACATCTTCTCGGTTTCAGTGTGACTAATTCTAGCTTACTCAGCAAATCATCTTTTCCAACTACACCTCCGTTATCCCACCTGCTACTTGGACCTTTGAATGAAGTAGTAAACTCACCTAATTTGGCTCTTTCTACTCACTTCAACTCTGATACTGATTCTGCATTGAATGATAGTCAGCAGTTAGTTGAAGTTACGCGTGCAGAGAAACGTCACAAATCAATGGAGGAAGCGTCGCTACAAAGCATTCCGTCGAGCACTTTGAAACAATTGCTCATTTTATGCGCCAAAGCAATGTCTGAAAACAACATGAAAGATTTTGATCAATTGATAGACAAGGCTAGAAGTGCTGTGTCTATCAGCGGGGAGCCAATTCAGCGGCTCGGTGCTTATTTAGTGGAAGGGCTTGTTGCAAGGAAGGAGAAATCGGGTAACAACATCTATCATGCTCTTAGGTGCAAGCAGCCTGCAGGTACAGAGTTACTATCATACATGCAGATGTTATATGAAATTTGTCCATACTTCAAGTTTGGTTACATGGCTGCCAATGGAGCTATTGCTGAAGCATGCCGAAATGAGGACCGAATTCACATAATAGATTTTCAGATTGCACAGGGAACTCAATGGACGACTCTCCTTCAAGCTCTTGCAGCAAGGCCTAGTGGGGCTCCACATGTGCGGATCACCGGGATTGATGATCCTGTTTCTAAATATGCTCGAGGAGAAGAATTGGAGGCAGTTGGCGAAAGTTTGTCGAAAATATCTAAGAAATTTGACATTGAGGTTGAGTTTCATGGAATTCCTGTCTTTGCCCCAGATGTAACCAGGGATATGCTTGATGTCCGGCCTGGAGAGGCCTTGGTCGTTAACTTTCCTCTTCAACTCCATCATACGGCCGATGAGAGTGTCGATGTGACTAATCCAAGGGACGGACTTCTGAGATTGGTTAAGTCTCTTTCTCCTAAGGTAACCACATTGGTGGAGCAGGAATCGAACACAAACACGACGCATTTCTTCAACAGGTTCATAGAAACACTTGATTACTACTTGGCCATGTTCGAGTCCATCAATGTTGCTCTCCCAAGAACGAGCAAGGAGCGGATCAACGTGGAACAACATTGTTTAGCTCGAGATATCGTGAACATTGTTTCTTGTGAAGGGAAGGAAAGGGTGGAGCGGCATGAACTGTTTGGTAAGTGGAGGTCTAGGTTCACAATGGCAGGTTTTGTTCAATATCCTTTGAGCTCTTATGTGAATTCCATTATAAGAAACCTCTTGAATCGCTATTCTGAGAATTATAGTCTAGTGGAGAAGGATGGAGCCATGCTGTTGGCATGGAAGAACAGAAATTTGATATCAGCTTCAGCCTGGTATTAA 1386 0.4358 MDSSHLLGFSVTNSSLLSKSSFPTTPPLSHLLLGPLNEVVNSPNLALSTHFNSDTDSALNDSQQLVEVTRAEKRHKSMEEASLQSIPSSTLKQLLILCAKAMSENNMKDFDQLIDKARSAVSISGEPIQRLGAYLVEGLVARKEKSGNNIYHALRCKQPAGTELLSYMQMLYEICPYFKFGYMAANGAIAEACRNEDRIHIIDFQIAQGTQWTTLLQALAARPSGAPHVRITGIDDPVSKYARGEELEAVGESLSKISKKFDIEVEFHGIPVFAPDVTRDMLDVRPGEALVVNFPLQLHHTADESVDVTNPRDGLLRLVKSLSPKVTTLVEQESNTNTTHFFNRFIETLDYYLAMFESINVALPRTSKERINVEQHCLARDIVNIVSCEGKERVERHELFGKWRSRFTMAGFVQYPLSSYVNSIIRNLLNRYSENYSLVEKDGAMLLAWKNRNLISASAWY* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0318 461 Pfam GRAS domain family 91 460 IPR005202 -
Amo03g0318 461 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 57 460 IPR005202 -
Amo03g0318 461 PANTHER CHITIN-INDUCIBLE GIBBERELLIN-RESPONSIVE PROTEIN 1 57 460 - -
Amo03g0318 461 ProSiteProfiles GRAS family profile. 82 461 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0318 Amo-Chr3 6039239 6042495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0318 81 460 GRAS Transcription Factor Family AT5G48150 62.467 7.72e-175 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Amo03g0318 GRAS 1.6e-127 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0318 - - adu:107478273 892.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2205 13 36970186 36973516 Amo03g0318 03 6039239 6042495 hybridization
Amo08g1415 08 23036531 23039996 Amo03g0318 03 6039239 6042495 PCT
Amo03g0318 03 6039239 6042495 Amo08g1415 08 23036531 23039996 PCT