Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0287 ATGGCAGATGATCAATTTCGAGCAAGTGCAAATTGGTGGGATTCATCAAGAAACGTTGTGAGGTTTGAAAGCCGGGAACCGCAATCTGGATCCTCTGGCCTCACCAACAACACGGGAAATTTTTCTTGGCATGGCGTTGGTGATGATAAAATAATGAAGCTACCAAGATCTTCCACCATGGAAAATTCCATGTCTTCTTCTTCTGCAGGCGCCTCATCAGGTAGGTCCTGTGTGGTGTTCCATGAGAGGTTTCAACAACAACAAAACTTGGATATGATGATGGGTTTGGGGCTTTCTTCTCAAGCATCCACGGATTGGAATCAAGCATCTTTCATGAGAGCAGAAAAGGCATCCGAGATGTTGCAACAGAATTTGAGCGCTCATCAAGAAATACAGTTCAGTCCTCAATACAGCAACATCACAAGCCAACAAGTATTATCCTCTAATTTTCAGATGGATTCTTCTTCTTCAGCGCCTTTATATTGTAACACTTCAATGCTACAAGGGCTATTAGGACCTGAAAGCAATAATCAACCACACCAAGGGCCTATGAGTAATTTTCCATACTCAACGTGTTTGAACAGCAACAATAATAACAACCAATTGCATTTCACTAATAACGCCCCGTTCTGGAACGCTTCGGAGCCTGCGGCGGTTTCCATTAAAGATGGTCGATCCATCTTCTTCCCTTCATTGCACCAACCATTTTCGGCGCCAAAGAATATATGTGAAGTAAGGGAGTCAGGAGGTAGCATGTTGAAGAAAAGTGAGAATGAGCAATCATCAAAAAGGCCTAGAAACGAAACACCTCCATCACCTTTGCCAGCTTTTAAGGTGAGAAAAGAGAAGATGGGAGACAGAATCACTGCCCTACAGCAATTGGTTTCGCCTTTCGGAAAGACTGATACGGCATCGGTGCTCTCTGAGGCCACTGAATACATCAAATTCCTCCATGAGCAAGTGACTGTTTTAAGCACCCCATATATGAAGAGTGGAGCTCAAACACAGCATCACCAGAATTCTGGTAAATCAAAGGAAGCTGATGGACCAAAACAGGATCTAAGAAGCCGAGGGCTGTGTCTGGTGCCAATTTCAAGTACATTTCCAGTGACTCATGAACCCACAGTTGATTTTTGGACGCCAACATTTGGAGGAACTTATAGATAA 1167 0.4362 MADDQFRASANWWDSSRNVVRFESREPQSGSSGLTNNTGNFSWHGVGDDKIMKLPRSSTMENSMSSSSAGASSGRSCVVFHERFQQQQNLDMMMGLGLSSQASTDWNQASFMRAEKASEMLQQNLSAHQEIQFSPQYSNITSQQVLSSNFQMDSSSSAPLYCNTSMLQGLLGPESNNQPHQGPMSNFPYSTCLNSNNNNNQLHFTNNAPFWNASEPAAVSIKDGRSIFFPSLHQPFSAPKNICEVRESGGSMLKKSENEQSSKRPRNETPPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEATEYIKFLHEQVTVLSTPYMKSGAQTQHHQNSGKSKEADGPKQDLRSRGLCLVPISSTFPVTHEPTVDFWTPTFGGTYR* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0287 388 MobiDBLite consensus disorder prediction 251 277 - -
Amo03g0287 388 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 57 378 - -
Amo03g0287 388 MobiDBLite consensus disorder prediction 331 353 - -
Amo03g0287 388 Gene3D - 278 341 IPR036638 GO:0046983
Amo03g0287 388 CDD bHLH_AtbHLH_like 274 325 IPR045239 -
Amo03g0287 388 MobiDBLite consensus disorder prediction 24 48 - -
Amo03g0287 388 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 268 317 IPR011598 GO:0046983
Amo03g0287 388 MobiDBLite consensus disorder prediction 24 43 - -
Amo03g0287 388 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 278 334 IPR036638 GO:0046983
Amo03g0287 388 PANTHER TRANSCRIPTION FACTOR BHLH123 57 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0287 Amo-Chr3 5099701 5103762 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0287 202 388 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 57.789 2.72e-66 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0287 - - adu:107478336 759.214