Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0275 ATGATGGCCTATGATAGAGCGTCGTCTTCGTCATCGGCGCTGGCGCCGGCGCCGTGGGTGTGGGCGACGTCACCCTTATCAGAAAGCATGTATGATGTTTTTCTGAACTTTAGAGGCGCAGATTCAAGGTTCCTGTTCACAGACTATCTGTATCATGGACTTGCCGACGTAAAAAAACTGGAGGTATTCAGAGATGATCCGGGTCTGGAACTAGGAGACGCAATTAAAGCTACTCTGATGGAAGCCATTAAAAGATCAAGGATTCATATTGTTGTGATGAGTGAAAACTATGTATCTTCCCGGTGGTGCCTACTAGAACTACAGCAGATGCTCAAGTTTGGAAAGAAAGGGTCCGTTATCCCAATTTTTTATCGCGTGGAGCCGTCAGAAGTGAGATTTAGCGACAAATCTAAGGAAGCCATGAAGAAACATGAAGAGAGATACGGCAAAGACACGGTGGACGCGTGGAAGTCGGCTCTATCTATAGTTTGCGGGCTAAGCGGGGAACACATTTTTTGTGTTGAGAAATCACAGAAGTATGAAACTGGGGTCATTGGCAAGATTGTTGAACAAGTCTCTGCAAAACTTCTAAAGATCAAGCAACAAATAAATAGATTTGATTCTCAATTTGAAGAGGTTGAATCACTTTTGAACCTTGAATCTCATGATACTACTGTTCGTATGGTGGGAATTTATGAAGATCCTAAAATAGGCAAAAGTTACATAACAACATTTGCCTTTGAGCTATACTATAAGATCAAATATAAGTTCCAAGCGGCAGGTTTTCTTGTCAATGTTAGTAAACAGCTAATGAAAATCACCGATAATCTCTTGGAAAATCTCCAAAAGGAGCTTCTTTCTGATATGGATGTGGAGACCATGCAGGAATTGGAGCATAAAAAAATGCTTCTGGTTCTGGAAGGGGTTGATAATAAAGATCATTTGGAGTTGCTAGTGGGAATGGGAATAGGTGATTGGTTTGGTCGTGGTAGTAGGATCATCATAGCAACAGAAAACAGATATCTTTTTCGTTATTGTCCTCCTGTGATGAATGGTGTTAAGCTTGAGAAACATTGCATACATGAAGGTGAATTGGTGAAGGAAAAAATTGTGAAGGAAAAGAATGTAGTGGGATTTGTAAAGGATTTCATTGATGTAATTAATCAACTGAGGGAAGAAGATTCAAAGGGGAGGAATGTCGTTTCCATTGTTGGCATGGGAGGATCAGGCAAGACCACCCTTGCCCGAAAGATCTTCGATAGCAAATTGGTCACTGAGCTATTCCCTTACCGTGCATGGGTAATTGTTTCCAAAGATTATAGAGAAAATGAAGTTTTCTTAAGCCTTCACCGCTCTTTGATGCCATCCACCACACCTATACCTAATAATGAAGAGGTTTTAAAGGCAAATGTGAGAAAATATTTGAATCGGAAAAGGAGAAAGTATTTGGTAGTTCTAGATGATGTGTGGGATACTCAAGTGTGGGACAAGATAAAGGATTATGTTCTCCCAGATAACAATAATGGAAGCAGGATATTGGTGACTACACGAAATCATCAGGTGGCAAACTATGCAAGGTCAAAGGAGCCTCACCATGAACTTAGCCGTTTGAATGAAGAAGAAAGTTGGGAATTGTTTTGCAGTTACGTGTTTTGTGGAGAAGAATGTCCCCCTGATTTAGAGCCTATTGGTAAATCAATTGCTGAAAGTTGCAAGGGTTTACCATTGGCTATCAAAACCACAGCTGGAATTGTGGCAAAGCGAGAGAGATCACAAGATGCATGGCAAAAAATCAAGAACCTGATCCCTTATTGGCGTGTTGCTGAAGACAAGGATGGTAAGAAGATGATGGAGATATTGAAGCTTAGCTACGATGATCTGTATGAGAAAATGAAGCCATGCTTTTTATATCTTGGAGTGTTTCCTGAAGATGAAGAGATTTGGGTGAGAGACTTAATCCATCTATGGATAGCAGAAGGGTTCATAGAACCAATCCAAACTGGAAGATCAAAAGCACCACCCCCAGAACCTGAAGATATTGGTGAGCAATACTTGAAGGAGCTAGTGGACCGTAACTTGGTACAAGTGACCAGTAGGAAGAGTGATGGCAAAGGCGTGAAAACATGTCGGATCCATGATCTCATCCGAGAACTATGCATATCAGTGAGTAATAACAGTAACAATGCTCGTAGGTTGTCCTTTCCCAATGATGTAGGATCCTATGCATGTTCAGTAACATGTAACCAATCAAGGACTTGTTCCTTGTTCGCTTATGGAGATATCGCGGGGTGGTCACATCATGTTCCAGAAGATTGCCAGGTTAATGTGCTATACTTGAAAGGAGTGGATTGGAATCTATCTAGCAAAGAGAATTCTGAGTATTTGATGAGGTTGAAAAGCCTCAGGTTCTTGAAAATGGATTATACTGCCCCACGCGGGTTATTTAATAAGCTTCAGAGTTTACAAACATTACGTGTACTGACCACTTTGGAGTATGAGAAAACCATTGATGAGGGGTTAAGGCATTTGAGACATCTTAGTTGTGCTTCTGGAGTGCATTTATTAGAAAAAGAAGGGGTTAAATATAAAATGCAAAATGTTCAAACTCTATGTGATGTGTATATGGATTCACGACTGGGGTTCTTACTCGACAATGGCTACTTTCCCAACTTGAGAACACTGGGTTTAATACCGATGAGTGAAGACCAAGGTCAATCATTGAGGAACTTGCACCGCCTAAGCAAGCTACATAAATTGAAATTACAGTTTGGGGTCTACTCTAGAAGGGTTCCATTAGATAAAATTACATTTCCGTCAAATCTTAGCAAGATTACCTTGTCATGGTTTGAGGATTTAAAGTACCAAGACATGAATGCTTTGGGACAAATTCCCAGCCTTCAAATTTTAAAATTATATCAAGTGAAATGTACCAAAAAAGCCCTTAATTGTGGTGGTGCTGGGAGCTTTCCGCAGCTTCAAGTTTTTATCATGATATCAGTGAAGGTCACACGTGTTACATTAGAAGACGCTGCGATGCCTTGCCTTCAACGTGCGCTCTTTCGTGAGTGTCGTGGCTTGAAGTCCAAGTACCTTCCTGAACGAATGCTTTCCTTGGGTAGTAACTTGCATTTTATAGAACCTTTTGATGATGATGATGATGATATTGTTGATGAGGATTTTAATTTTGATGATTGA 3195 0.4056 MMAYDRASSSSSALAPAPWVWATSPLSESMYDVFLNFRGADSRFLFTDYLYHGLADVKKLEVFRDDPGLELGDAIKATLMEAIKRSRIHIVVMSENYVSSRWCLLELQQMLKFGKKGSVIPIFYRVEPSEVRFSDKSKEAMKKHEERYGKDTVDAWKSALSIVCGLSGEHIFCVEKSQKYETGVIGKIVEQVSAKLLKIKQQINRFDSQFEEVESLLNLESHDTTVRMVGIYEDPKIGKSYITTFAFELYYKIKYKFQAAGFLVNVSKQLMKITDNLLENLQKELLSDMDVETMQELEHKKMLLVLEGVDNKDHLELLVGMGIGDWFGRGSRIIIATENRYLFRYCPPVMNGVKLEKHCIHEGELVKEKIVKEKNVVGFVKDFIDVINQLREEDSKGRNVVSIVGMGGSGKTTLARKIFDSKLVTELFPYRAWVIVSKDYRENEVFLSLHRSLMPSTTPIPNNEEVLKANVRKYLNRKRRKYLVVLDDVWDTQVWDKIKDYVLPDNNNGSRILVTTRNHQVANYARSKEPHHELSRLNEEESWELFCSYVFCGEECPPDLEPIGKSIAESCKGLPLAIKTTAGIVAKRERSQDAWQKIKNLIPYWRVAEDKDGKKMMEILKLSYDDLYEKMKPCFLYLGVFPEDEEIWVRDLIHLWIAEGFIEPIQTGRSKAPPPEPEDIGEQYLKELVDRNLVQVTSRKSDGKGVKTCRIHDLIRELCISVSNNSNNARRLSFPNDVGSYACSVTCNQSRTCSLFAYGDIAGWSHHVPEDCQVNVLYLKGVDWNLSSKENSEYLMRLKSLRFLKMDYTAPRGLFNKLQSLQTLRVLTTLEYEKTIDEGLRHLRHLSCASGVHLLEKEGVKYKMQNVQTLCDVYMDSRLGFLLDNGYFPNLRTLGLIPMSEDQGQSLRNLHRLSKLHKLKLQFGVYSRRVPLDKITFPSNLSKITLSWFEDLKYQDMNALGQIPSLQILKLYQVKCTKKALNCGGAGSFPQLQVFIMISVKVTRVTLEDAAMPCLQRALFRECRGLKSKYLPERMLSLGSNLHFIEPFDDDDDDIVDEDFNFDD* 1065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0275 1064 SUPERFAMILY L domain-like 706 1031 - -
Amo03g0275 1064 PRINTS Disease resistance protein signature 400 415 - -
Amo03g0275 1064 PRINTS Disease resistance protein signature 476 490 - -
Amo03g0275 1064 PRINTS Disease resistance protein signature 571 585 - -
Amo03g0275 1064 Gene3D - 536 628 IPR042197 -
Amo03g0275 1064 Pfam NB-ARC domain 385 626 IPR002182 GO:0043531
Amo03g0275 1064 Gene3D - 366 531 IPR027417 -
Amo03g0275 1064 Gene3D - 196 348 IPR027417 -
Amo03g0275 1064 ProSiteProfiles TIR domain profile. 29 196 IPR000157 GO:0007165
Amo03g0275 1064 PANTHER DISEASE RESISTANCE PROTEIN RP 369 1033 IPR044974 GO:0006952
Amo03g0275 1064 SMART till_3 30 166 IPR000157 GO:0007165
Amo03g0275 1064 ProSiteProfiles T-box domain profile. 589 705 IPR046360 GO:0003700|GO:0045893
Amo03g0275 1064 PANTHER - 369 1033 - -
Amo03g0275 1064 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 370 638 IPR027417 -
Amo03g0275 1064 Gene3D - 30 195 IPR035897 -
Amo03g0275 1064 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 206 346 IPR027417 -
Amo03g0275 1064 Gene3D Ribonuclease Inhibitor 765 1046 IPR032675 -
Amo03g0275 1064 Pfam TIR domain 31 208 IPR000157 GO:0007165
Amo03g0275 1064 Gene3D - 629 720 IPR036388 -
Amo03g0275 1064 SUPERFAMILY Toll/Interleukin receptor TIR domain 25 168 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0275 Amo-Chr3 4985011 4996441 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0275 80 346 WRKY Transcription Factor Family AT4G12020 29.893 1.51e-19 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0275 - - aip:107637424 1150.19