Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0266 ATGCCTCCTCCATTTGATATGATTTCCAAGATACATCTTCCTAGAGAGGCTTGGAGGATGAAAGCTAGGGTTCTAAGGCTTTGCGTTGTACCCTCTTTTGGTAACCATGAGGTTCCTAACTCAATGGAGATGATTCTCCTTGATGAGCATTGTAAAAAACTTCAAGATACAGTTAAGAAACCACTCCTTAATAGGTTTAGGGATCATATAATTGAAGGTCAAGTTTATAGAATGGCATACTTTACTGTTGTGTCAAATCATGGTAGTTATAGAGCAACTTCTCATGAATTCAAATTGGTTTTCCTTCACCGAATCACTGTTGTAGCTGTTGATGAAGATGTTATCCCTAAGACTTGTTTCAACATGTTACCTTTTTCTGAGCTGTTGAACATGACCCAAGATTATGATTTTTTAGTTGATGTCGTTGGTCTTTTAACTTCAGTGGGAGAAGAGAAAGAATATGCAAAAGAGGGGAAAATTGTGAAAATGATTGTGCTGGAATTAACTTCAAAAGATCTTACAGTGCGATGTGCATTATTTGGGGACTATGTTAATCAAGTAAATCATTTTCTTGCCTCTGGCTATGTGGAGCAGCCTGTTTTAGTCATTCAACTTGCAAAAGTCAAGTTCTTTAGGGGCCTTCAAAATGTGATGTATGCCACTCAAATGTTATTTAATCCTGATCTTCCTGAAGTTGTTGAATTCAGGCAGAGTATGGTTGAGCAAGGTGTCAATGGTACCCAGCCACTCTTTATTGCAAATGAGGGTAAAGTTGTTTCCTTGGAAGATGATTTCATGCGTTTAACTAGAAAATGCACTATTGAAGAGCTTCAAGATAACAATGAGGAGGGTTCTTTTATCATTTTTGGTACAATCCAAGGTATTGTTGAGGATGGAGGTTGGTGGTATTCTGCTTGTGTCTGTGGAAAGGGTATCTATCATCAAAATGGTGCATATTACTATGATTTTTGTTTAAAGCACATAACTAATGTGACTCCAAGATTTAAAATTAAAATAACAGTTGAAGATCATAGTGGGGAGGGTATTTTCCTTCTCTTTCATCGTGAGGCATCTTATTTGCTTAAGAAATCATGTGCTGACTTGTTTACTGAGGTTCAAAGAGATGCAAGTCTTGTATGTGGGGATACTTATCCTCCCATATTCCAAGGACTCATTGGAAAGAAGTTACTGCTGAAGGTTGATACCAAAGGTGTCCCACATGATACATTTTATGGCACTTTCCGAGTTAGGAGAATATGTGATGATCCCACCATTATTGCCATGTTTGAACTTCCTGATTATGATGCTGATGACGAGTCTACTCCAAAAAAGGTTACATATACATATAATTATTTTTAG 1359 0.3716 MPPPFDMISKIHLPREAWRMKARVLRLCVVPSFGNHEVPNSMEMILLDEHCKKLQDTVKKPLLNRFRDHIIEGQVYRMAYFTVVSNHGSYRATSHEFKLVFLHRITVVAVDEDVIPKTCFNMLPFSELLNMTQDYDFLVDVVGLLTSVGEEKEYAKEGKIVKMIVLELTSKDLTVRCALFGDYVNQVNHFLASGYVEQPVLVIQLAKVKFFRGLQNVMYATQMLFNPDLPEVVEFRQSMVEQGVNGTQPLFIANEGKVVSLEDDFMRLTRKCTIEELQDNNEEGSFIIFGTIQGIVEDGGWWYSACVCGKGIYHQNGAYYYDFCLKHITNVTPRFKIKITVEDHSGEGIFLLFHREASYLLKKSCADLFTEVQRDASLVCGDTYPPIFQGLIGKKLLLKVDTKGVPHDTFYGTFRVRRICDDPTIIAMFELPDYDADDESTPKKVTYTYNYF* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0266 452 CDD RPA1_DBD_B_like 140 239 - -
Amo03g0266 452 Pfam Domain of unknown function DUF223 43 135 IPR003871 -
Amo03g0266 452 SUPERFAMILY Nucleic acid-binding proteins 3 110 IPR012340 -
Amo03g0266 452 CDD RPA1_DBD_A_like 19 107 - -
Amo03g0266 452 SUPERFAMILY Nucleic acid-binding proteins 120 239 IPR012340 -
Amo03g0266 452 Gene3D - 5 112 IPR012340 -
Amo03g0266 452 Gene3D - 114 248 IPR012340 -
Amo03g0266 452 Pfam Replication factor-A C terminal domain 288 374 IPR013955 -
Amo03g0266 452 PANTHER REPLICATION FACTOR A 1, RFA1 22 369 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo03g0266 452 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 369 - -
Amo03g0266 452 Gene3D - 262 424 IPR012340 -
Amo03g0266 452 CDD RPA1_DBD_C 274 417 IPR013955 -
Amo03g0266 452 SUPERFAMILY Nucleic acid-binding proteins 271 421 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0266 Amo-Chr3 4774560 4776757 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0266 17 368 Core DNA Replication Machinery Family AT5G08020 22.703 4.75e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0266 - - adu:107471135 744.577