Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0260 ATGCCAGGAATGAAACTTGGATTAAACTTAGTTACTGGTCTGAATAGATTTCTATCGTGTTGGAAAAGCTCAAATGACCCTGCTATAGGAGAGTATTCTTTAAAAATTAAACCCAAAGGGTATCCGCAACTAGTACAAATGAAGGGATCAGTAATAGTTACTAGAGCAGGACCATGGAATGGTCTTTCTTTTTCAGGATATCCATATGCCAACAACATATATAGCATCGATTTTGTAGTGAATGATGAAGAGATTTATTATCAGGTCACAATGAGTGATAGGTCCCTTTTCTCCATATACAGAACAATCACTTCAGGTACGGGTAATGTTTTGGTTTGGACAAGTCAAACAAGAAATCAGGTTAAAAACACTCCAACTCAGCTGGTAGATCAGTGTGAAATGTATGCCTTTTGTGGTTCAAATTCTATATGCTATATGGATGGTAATGCTCCAACATGTGAATGTTTGAAAGCATATGTTTCCAAATTTCCCAGACAATGGAATATGTCTGATTGGTCTAGTGGTTGCGTCAGAAAGACTTGGTTAGATTGTAATAACACAGATGGGTTCCTGAGGTACAGAGATATGAAGTTGCCAGATACATCTTCTTCAACGTATAATAAGACAATGAATCTTGAGGAATGTCGAGAATCCTGCTTGAAAAACTGTTCTTGTACAGCGTATGCAAATATGGATATTCGTAATGGAGGAAGTGGCTGCCTACTTTGGTTTGATCATCTCATTGACATGAGGATGTTCTCTAAAGGAGGACAAGACCTTTACATTAAAGTCCCTGCTTCAGAATTAGCAGCGGGTAACGGCCATGGGAATATGAAAAATAAGAACGTTGGAATCATAGTAGGTTCGGTTATCTTTGGATTAATCGCATGCGCTGGCACAATGTCGATGATAATTAAAAAGAAAGGTGTAGCAAGAAATATATGCAAGAAAAAGCATAGTTGGAAAGATATCGATCTACCGATATTTGATTTTTCAGTCATAGCTAAAGCTACAGGAAACTTTGCATCTAGTAAAAAGCTTGGAGAAGGTGGTTTCGGTCCCGTATATAAGGGCATACTTCAAGATGGTCGAGAAGTAGCTGTAAAAAGGCTTTCAAAAAGGTCTACTCAAGGGCTGGAAGAATTAAAAAATGAGGTGGTGTTGATAGCTAAACTTCAGCATCGGAATCTTGTCAAGCTTCTTGGTTGTTGTATTCAAGAGTCAGAAAAAATACTAATCTATGAATTCATGCCTAACAAAAGTTTAGACCAATTTATTTTCGAGTTGATAAGTGGAAAGAAGAATAGAGAATTCTCAAACTCTGAAAATGACCTTAATCTTCTTGGACATGCATGGAAATTGTGGATTAATGAGAGGCCACTGGAATTATTGGATGAAGTATTAAGGGAATGGTGCAACCCCACTGAAGTCATAAGATGCATACAAGTAGGTTTATTATGTGTGCAACAAAGGCCAGAAGATAGGCCTAACATGTTATCGGTGGTTCTAATGCTAAATGGTGAGAAATGGTTGCCCCAACCGAAATTTCCTGCATTTTATGTAGATTGTGCTGGGACACCGAAAGAAGAATCTTTATCGGCAAACTATGTAAAATTCTCAGTTAATGAAGTTTCCATCACAATGTTGGATGCAAGATAA 1659 0.3755 MPGMKLGLNLVTGLNRFLSCWKSSNDPAIGEYSLKIKPKGYPQLVQMKGSVIVTRAGPWNGLSFSGYPYANNIYSIDFVVNDEEIYYQVTMSDRSLFSIYRTITSGTGNVLVWTSQTRNQVKNTPTQLVDQCEMYAFCGSNSICYMDGNAPTCECLKAYVSKFPRQWNMSDWSSGCVRKTWLDCNNTDGFLRYRDMKLPDTSSSTYNKTMNLEECRESCLKNCSCTAYANMDIRNGGSGCLLWFDHLIDMRMFSKGGQDLYIKVPASELAAGNGHGNMKNKNVGIIVGSVIFGLIACAGTMSMIIKKKGVARNICKKKHSWKDIDLPIFDFSVIAKATGNFASSKKLGEGGFGPVYKGILQDGREVAVKRLSKRSTQGLEELKNEVVLIAKLQHRNLVKLLGCCIQESEKILIYEFMPNKSLDQFIFELISGKKNREFSNSENDLNLLGHAWKLWINERPLELLDEVLREWCNPTEVIRCIQVGLLCVQQRPEDRPNMLSVVLMLNGEKWLPQPKFPAFYVDCAGTPKEESLSANYVKFSVNEVSITMLDAR* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0260 552 ProSiteProfiles Protein kinase domain profile. 341 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo03g0260 552 Gene3D Phosphorylase Kinase; domain 1 315 416 - -
Amo03g0260 552 SUPERFAMILY Protein kinase-like (PK-like) 327 523 IPR011009 -
Amo03g0260 552 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 426 550 - -
Amo03g0260 552 SMART ntp_6 185 264 IPR003609 -
Amo03g0260 552 Pfam S-locus glycoprotein domain 55 162 IPR000858 GO:0048544
Amo03g0260 552 Gene3D Transferase(Phosphotransferase) domain 1 421 516 - -
Amo03g0260 552 Pfam Protein tyrosine and serine/threonine kinase 344 427 IPR001245 GO:0004672|GO:0006468
Amo03g0260 552 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 428 - -
Amo03g0260 552 Pfam Domain of unknown function (DUF3403) 511 552 IPR021820 GO:0004674
Amo03g0260 552 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 426 550 - -
Amo03g0260 552 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 1 428 - -
Amo03g0260 552 CDD PAN_AP_plant 182 265 - -
Amo03g0260 552 Gene3D Hepatocyte Growth Factor 181 261 - -
Amo03g0260 552 ProSiteProfiles PAN/Apple domain profile. 184 265 IPR003609 -
Amo03g0260 552 Pfam PAN-like domain 184 250 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0260 Amo-Chr3 4699327 4704811 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0260 406 520 Receptor kinase-like Gene Family AT4G23190 39.496 4.90e-18 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo03g0260 PK_Tyr_Ser-Thr 2.5e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0260 - - aip:107614885 545.814