Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0250 ATGAAGATCGGATGGGACTTAGTAACTCGAAAAGAATATTTCTTATCATCTTGGAAGAGCGACGATGATCCGTCCGAGGGAGAGTATTTTCTAAGAATAGTAACAAAAGGATATCCACAGTTTTTCACATTCAAGGGATCAAAAAAGATATTCAGAGGAGGATCTTGGAATGGAGTGGGTTTTTCAGGTTATCCAACTCATCAACTGTCACAATATAGACAACGATTTCTCATGAATGATAAACAAGTGTTTTTAGAATGCGATATACTTGACAAATCAATTGTCTCAATATATAAACTAAGAGCTTCTGGCCTAGGACAAACTTACGCTTGGACTAATCAGAGTAACACCAGAAATGTCATCTCCACCGGCGTTCAAGACGAGTGCGAACGCTTCGCTTTGTGCGGTGCCAACTTTGTATGCATTCTCGATGGTAATCTTCCAACCTGTGAATGCCTGAAAGGCTATGTTCCTAAGTTTCCTGAACAATGGAATATATCGTATTGGTCTAACGGTTGTGTTGCGAGGAATGTTAAATCTGATTGTGTCAATGGAAGTAGCAGTGATGGGTTCTGGAAATATACAGAGATGAAATTGCCGGACACTTCTTTTTCATGGTTCAATGAGATCTTGAGCCTTGAGGATTGTCGAAACAAGTGTTTGGAGAATTGTTCTTGTACTTCTTATTCGAACTTGTATGTTCTTGATGGAGGGAGTGGCTGTTTACTTTGGTTTGATGATATGGTTGACATGAGGAGATTCACTCAAGGGGGACAAGATCTTTATATCAGAGTCCCTGCTTCTGAACTAGATAATGGCCGCAGAAAGAAGATGATGCTAATAATAGGAATAACAGTTGGTGGGATTATTTTTGGATTAACATGTGCCTGCGCATTGATACTCAGAAAGCGAGGGGTAGCAAGATTTATTTACAGGAAGCATTATGAAAGTATACTGAAAAAAGAAGAGATTTATCTACCAACATTTGACTTTTCAGTCATTGTTAAAGCCACTCAAAACTTCTCAAGCTGTAACAAACTAGGTGAAGGTGGTTTCGGACCAGTATACAAGGGCACATTGACAAATGGTCAAGAGTTAGCTGTGAAAAGGCTTTCGAAAAATTCTGGACAAGGATTGGAAGAGTTTAAAAATGAAGTGGTGTTGATAGCTAAACTTCAGCATCGTAATCTTGTAAAGCTTCTTGGATGCTGCATAGAGGAAGAAGACATAATGTTGATCTATGAATATATGCCCAATAAAAGCTTGGACAACTTTATTTTCGATGAAACTAGAAGGCACCTGCTGGAATGGCCTAAGCGTTTCAATATTATTTGTGGCATTGCTCGAGGACTTCTTTATCTTCATCAAGATTCTAGGTTAAGAATTATTCATAGAGATCTAAAAACCAGCAATATTCTACTTGATGCAAATCTGGATCCAAAAATATCTGATTTTGGCTTAGCTCGAACATTGTTAGGAGATCAAATTGAGGCAAATACAACTAAAGTTGCTGGAACATATGGTTATATGCCTCCTGAATATGCTGTACGTGGGCATTTCTCTACGAAATCAGACGTCTTCAGTTATGGAGTGATAGTTTTAGAGATTGTAAGTGGAAAAAAGATCAGAGAATTTTCCGATCCAGAACAGTGTCATAATCTTCTTGGATACGCATGGAGGCTATGGAGTGAAGGAAGACAATTAGAACTACTAGATGAAGCATTAGGGGAAAGGTTCACACCTTCTGAAGCAACAAAATGCATACAAGTTGGCCTACTATGCGTTCAACAAAGGCCAGAAGATAGGCCTAACATGTCATCTGTTGTTTTGATGCTAAATGGTGAAAAATTATTGCCCAATCCAAAAGTTCCTGCATTTTACATTGAAAGAGATACCATTCCTGAATTAGATGCTTTGTTGGAAAATTGCATGTCGCGAAATGAAGTTTCCATCACAGTGTTAGAAGCTAGATAA 1974 0.3835 MKIGWDLVTRKEYFLSSWKSDDDPSEGEYFLRIVTKGYPQFFTFKGSKKIFRGGSWNGVGFSGYPTHQLSQYRQRFLMNDKQVFLECDILDKSIVSIYKLRASGLGQTYAWTNQSNTRNVISTGVQDECERFALCGANFVCILDGNLPTCECLKGYVPKFPEQWNISYWSNGCVARNVKSDCVNGSSSDGFWKYTEMKLPDTSFSWFNEILSLEDCRNKCLENCSCTSYSNLYVLDGGSGCLLWFDDMVDMRRFTQGGQDLYIRVPASELDNGRRKKMMLIIGITVGGIIFGLTCACALILRKRGVARFIYRKHYESILKKEEIYLPTFDFSVIVKATQNFSSCNKLGEGGFGPVYKGTLTNGQELAVKRLSKNSGQGLEEFKNEVVLIAKLQHRNLVKLLGCCIEEEDIMLIYEYMPNKSLDNFIFDETRRHLLEWPKRFNIICGIARGLLYLHQDSRLRIIHRDLKTSNILLDANLDPKISDFGLARTLLGDQIEANTTKVAGTYGYMPPEYAVRGHFSTKSDVFSYGVIVLEIVSGKKIREFSDPEQCHNLLGYAWRLWSEGRQLELLDEALGERFTPSEATKCIQVGLLCVQQRPEDRPNMSSVVLMLNGEKLLPNPKVPAFYIERDTIPELDALLENCMSRNEVSITVLEAR* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0250 657 ProSiteProfiles EGF-like domain profile. 125 162 IPR000742 -
Amo03g0250 657 SMART serkin_6 341 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo03g0250 657 Pfam S-locus glycoprotein domain 51 160 IPR000858 GO:0048544
Amo03g0250 657 Pfam Protein tyrosine and serine/threonine kinase 344 610 IPR001245 GO:0004672|GO:0006468
Amo03g0250 657 CDD PAN_AP_plant 178 266 - -
Amo03g0250 657 Gene3D Transferase(Phosphotransferase) domain 1 417 619 - -
Amo03g0250 657 SMART ntp_6 186 265 IPR003609 -
Amo03g0250 657 Pfam PAN-like domain 182 251 IPR003609 -
Amo03g0250 657 ProSiteProfiles PAN/Apple domain profile. 182 266 IPR003609 -
Amo03g0250 657 SUPERFAMILY Protein kinase-like (PK-like) 324 625 IPR011009 -
Amo03g0250 657 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 655 - -
Amo03g0250 657 ProSiteProfiles Protein kinase domain profile. 341 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo03g0250 657 CDD STKc_IRAK 347 614 - -
Amo03g0250 657 Gene3D Phosphorylase Kinase; domain 1 315 416 - -
Amo03g0250 657 Gene3D Hepatocyte Growth Factor 182 263 - -
Amo03g0250 657 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 1 655 - -
Amo03g0250 657 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0250 Amo-Chr3 4558960 4562801 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0250 280 627 Receptor kinase-like Gene Family AT4G23190 51.821 3.84e-123 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo03g0250 PK_Tyr_Ser-Thr 6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0250 - - aprc:113865090 921.768