Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0249 ATGCTATTTGTTTGGCTCTTTGTTATCTCTTTTGTTAAACTCTCCACTTCACAACATACATTGACGCCGCGTCACTTTGTCCGTGACGGCGAGACTTTGCTTTCCCGTGATGGAACATTTGAGCTTGGTTTCTTCAGCCCTGGAACTTCTACAAATCGATATCTTGGTATATGGTACAGGAATGTGTTCCCAAAAGCAGTTGTGTGGGTGGCCAACCGCGAATCACCAATCAAGAACAATTCAGGAATCTTGACCATCAACAATGAAGGAGTTCTTGTGATCCTTGTGATTCTCATCAACGGCACAAACAGCAGCAGCCCTGTTTGGTCTTCTAATGTGCCAAGCGAAGCGGTTATTAATCCAATAGCACAGCTTCTGGAGACAGGGAATCTTGTGGTGAAGAATGGAGTTAAAGATTCAAACAACAATCAGTTTCTCTGGCAGAGTTTCAACTACCCTGGCGATACGCTTACCATGCAGGGCATGAAGCTTGGATGGAACTTAATGACAGGTCAAGAAATATTCCTTTCTTCTTGGAGAAGTAAGGATGATCCAAGCCAGGGAGAATATTCATTAAAGATTGACCGTATGGGATATCCACAACTTTTTAAGTATAAAGGTTCTGAAAAAAGGTTTAGAATAGGGTCATGGAATGGAGAAAGTTTTAGTGGATATTCATCTCATCAACTGAAACAAAATATTAGAGTAGAGTTCATCATGAATCATAAAGAAGTGTATCTAGTATTCAAAACCGTCGATAGATCAGTTACCTGGATTTATACAGTTACATCTTCGGGCCATGGAGAGCTTTCTGCTTGGACGAGTCAATCCAATAGCCGAAAAGTCATCTCGACCGGGGAGGAAGATGAATGCGAAAATTATGCCTTGTGTGGTGTTTATTCTGTGTGCAATATGAATGGTAATTCTCCTACATGTGAATGTCTCAAAGGATTTGTTCCCAAGTTTCCAGAACAGTGGAATATGTCATATTGGTCTAATGGTTGTGTTTCAAGGACGGAATTGGATTGTGATAAGAACACACATGGCTTCTTTAAGTACACAAACATGAAAGTGCCAGACACGTCTTCGTCGTGGTTTAGCAAGGCCATGAACCTTGATGAATGTCGGAAGAAGTGTCTGGAAAACTGTTCTTGTACGGCGTATGCCAATTTAGACATTCGCAGAGGAGGAACCGGTTGTCTACTCTGGTTTGGAGCTCTGATTGACACGAGGACGTTTTCTCAATGGGGACAAGACCTTTACATCAAGGTCCCTGCTTCTCAACTCGATAATGGTCTAAGTAAAATGAAGAAGTTGGTAGAAATCATAGTTGGTGTGATTTTATTTGGATTCATAACTTGTGTCAGCATAATGATACACAGAAGACAAGGGTTGGCAAGAATAATTTACAGGAAGCATTATGAAAATATACTGAGGAAGGAAGACATTGGTCTACCAAATTTTGATCTGTCTGTCTTAGCCAAAGCCACTGACAACTTCTCAAGCAGTAACAAGCTAGGAGAAGGAGGCTTTGGACCAGTGTATAAGGGCACACTAACAAATGGGCAAGAGTTAGCTGTTAAAATGCTTTCAGAAAGGTCTGTACAAGGGATGGAGGAATTCAGAAATGAAATTCTATTGATCGCCAAACTTCAACACCGAAACCTCGTGAAGCTTCTTGGTTGTTGCATTCAAGAAGAAAAAGTAATGTTGATCTATGAATACATGTCTAACAAAAGCTTGGATCACTTTATTTTTGATGAAAATAAAAGGAAGTTGCTAGATTGGCCTACACGTTTCAACATTATTGGTGGCATAGCACGAGGACTTCTTTATCTTCATCAAGACTCTAGGCTGAGGATTATTCATAGAGATCTAAAAACTAGCAATATTTTATTAGATGCAAATATGGAACCAAAAATATAG 1926 0.4008 MLFVWLFVISFVKLSTSQHTLTPRHFVRDGETLLSRDGTFELGFFSPGTSTNRYLGIWYRNVFPKAVVWVANRESPIKNNSGILTINNEGVLVILVILINGTNSSSPVWSSNVPSEAVINPIAQLLETGNLVVKNGVKDSNNNQFLWQSFNYPGDTLTMQGMKLGWNLMTGQEIFLSSWRSKDDPSQGEYSLKIDRMGYPQLFKYKGSEKRFRIGSWNGESFSGYSSHQLKQNIRVEFIMNHKEVYLVFKTVDRSVTWIYTVTSSGHGELSAWTSQSNSRKVISTGEEDECENYALCGVYSVCNMNGNSPTCECLKGFVPKFPEQWNMSYWSNGCVSRTELDCDKNTHGFFKYTNMKVPDTSSSWFSKAMNLDECRKKCLENCSCTAYANLDIRRGGTGCLLWFGALIDTRTFSQWGQDLYIKVPASQLDNGLSKMKKLVEIIVGVILFGFITCVSIMIHRRQGLARIIYRKHYENILRKEDIGLPNFDLSVLAKATDNFSSSNKLGEGGFGPVYKGTLTNGQELAVKMLSERSVQGMEEFRNEILLIAKLQHRNLVKLLGCCIQEEKVMLIYEYMSNKSLDHFIFDENKRKLLDWPTRFNIIGGIARGLLYLHQDSRLRIIHRDLKTSNILLDANMEPKI* 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0249 641 CDD B_lectin 24 153 IPR001480 -
Amo03g0249 641 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 19 641 - -
Amo03g0249 641 ProSiteProfiles EGF-like domain profile. 287 324 IPR000742 -
Amo03g0249 641 Gene3D Transferase(Phosphotransferase) domain 1 576 641 - -
Amo03g0249 641 SMART blect_4 24 153 IPR001480 -
Amo03g0249 641 SUPERFAMILY Protein kinase-like (PK-like) 484 641 IPR011009 -
Amo03g0249 641 Pfam Protein tyrosine and serine/threonine kinase 503 641 IPR001245 GO:0004672|GO:0006468
Amo03g0249 641 SMART ntp_6 345 424 IPR003609 -
Amo03g0249 641 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672|GO:0006468
Amo03g0249 641 Pfam D-mannose binding lectin 67 180 IPR001480 -
Amo03g0249 641 CDD EGF_CA 289 321 - -
Amo03g0249 641 ProSiteProfiles Bulb-type lectin domain profile. 18 146 IPR001480 -
Amo03g0249 641 Pfam S-locus glycoprotein domain 212 322 IPR000858 GO:0048544
Amo03g0249 641 CDD PAN_AP_plant 339 425 - -
Amo03g0249 641 Gene3D - 12 151 IPR036426 -
Amo03g0249 641 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 19 641 - -
Amo03g0249 641 Gene3D Phosphorylase Kinase; domain 1 465 575 - -
Amo03g0249 641 Gene3D Hepatocyte Growth Factor 343 421 - -
Amo03g0249 641 SUPERFAMILY alpha-D-mannose-specific plant lectins 67 185 IPR036426 -
Amo03g0249 641 ProSiteProfiles PAN/Apple domain profile. 343 425 IPR003609 -
Amo03g0249 641 SMART serkin_6 500 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo03g0249 641 ProSiteProfiles Protein kinase domain profile. 500 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo03g0249 641 Pfam PAN-like domain 343 410 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0249 Amo-Chr3 4552993 4557236 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0249 446 641 Receptor kinase-like Gene Family AT4G23190 55.224 3.69e-65 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo03g0249 Pkinase 1.1e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0249 - - gmx:100790261 816.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo03g0249 03 4552993 4557236 Amo18g1387 18 25641078 25646130 PCT
Amo03g0249 03 4552993 4557236 Amo08g1494 08 24448552 24451601 PCT