Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0214 ATGTCCACCACCACCACAGAGCAAGATACGTCACGTGACTCTCACACGCACTTCTACTCCACCAGCGACAACAACGTCGTCACAGACGACGACGACAGCGACCTCGATGACGATGACCAGCAGCAGCACCACAACTATGGCGAAGACAAAAGAGAATTCACCCAAAGAGCATGGTGCTGCAGATCCCGCGGCAGCAGGTGGAGGCGGTGGTGGCCAACGGGTAAAGTTCTGGACCCGAGGTCGAAATGGGTCCAGGAATGGAACAGAGTGTTTCTTCTGGTGTGCGCGACGGGTCTATTCGTGGACCCGTTGTTCTTCTATGTGCTCTCTGTGAGCGACACGTGTATGTGCCTCTTCGTGGATGGTTGGTTCGCCGTAACGGTAACGGTTCTGCGCTGCATGACGGACGCACTGCACGTGTGGAACATGTGGCTGCAGCTCAAGATGGCGAAGAGGATCTTTGGTTTGGGTGCTGCGGCCGCCGGCGGTGGTGGTGATGGAAGCAGCGGAGGGGTGCTGAGGGACACTAACCCCCGTACTGTAGCTGTTGGGTATCTCAAGGCTAAGACTGGATTCTTCTTTGATATCTTTGTTATCCTTCCAATACCTCAGATAGTGGTGTGGGTGGGAATCCCATCGTTGTTAGAGAAAGGGTCAGTGACATTGGTGATGACAGTGTTGCTGATAATGTTTCTGTTGCAATACCTTCCCAAAATATATCACGCAGTTTGCCATCTTCGAAGAATGCAGAACCTCTCTGGCTACATTTTTGGAACCGTTTGGTGGGGTATTGCTCTTAACATGATTGCCTATTTTGTCGCCTCTCATGCAGCAGGGGCATGTTGGTACTTGTTAGGGATCGAGAGAGCAGCAAAGTGCCTGAAAGAACAGTGTGCAAGAACAGATGGTTGTGGATCAAGGATTCTTTCATGCAAAGAAGCAATATACTATGGAAGTACAAGAAGCTTGGTTAGTGACAGAGCAAGGTTGGCTTGGGCAGGGAACAGGGAAGCAAGGTCCATTTGCTTAGATGGGTCTGACAAGTATAACTATGGAGCTTATAAGTGGACTGTTCAACTTGTCACCAATGATAATCGATTGGAAAAGATACTTTTCCCTATCTTCTGGGGCCTAATGACTCTCAGCACTTTTGGTAACCTAGAGAGCACAACAGAATGGCTAGAAGTAGTTTTTAACATCATTGTCTTGACCAGTGGTCTTCTTCTTGTCACCATGTTAATTGGAAACATCAAGGTGTTTTTGCATGCAACAACATCAAAGAAGCAAGCAATGCAACTGAAGATGAGGAACATTGAATGGTGGATGAGGAAGAGGCGGCTGCCGCCCGGGTTACGGCAGAGAGTGCGAACGTATGAACGGCATCGTTGGGCCGCCATGCGTGGCGTTGATGAGTGTGAGATGACCAGCAATTTGCCTGAAGGGCTAAGAAGAGACATCAAGTATCATCTTTGTTTGGATTTGGTCAAGCAGGTGCCACTATTTCAGCACATGGATGAACTTGTCCTAGAGAACATTTGTGACCGCGTGAAGTCTCTCATATTCACAAAGGGAGAAACAATAGCCAAAGAGGGAGACCCAGTCCAAAGAATGCTATTTGTAGTAAGGGGTCACCTTCAAAGCAGCCAACTTCTAAGAGATGGTGTGGAAAGTTGTTGCATGTTAGGTCCCGGAAACTTCAGCGGAGACGAGCTCCTTTCCTGGTGTTTAAGGCGGCCCTTCATCGAGCGCCTTCCGCCGTCTTCGTCCACTCTTGTAACACTCGAAACCACCGAGGCATTCGGCCTAGAAGCCGAGGATGTGAAATATGTTACACAGCATTTTAGATATACTTTTGTGAAGGAAAAAGTGAAAAGAAGTGCCAGGTATTATTCGCCAGGATGGCGAACATGGGCTGCCGTGGCGATTCAATTGGCGTGGAGGAGGTACAAGCATCGGTTGACTTTGACTTCCTTGTCCTTTATAATGCCAAGGAGGCCTGTGTTACGTTCCTCTTCTATGGGAGAAGACAGGCTTAGGCTCTATACAGCATTGTTAACCTCTCCAAAGCCTAATCAGGAAGATTATGACTTCTGA 2094 0.4862 MSTTTTEQDTSRDSHTHFYSTSDNNVVTDDDDSDLDDDDQQQHHNYGEDKREFTQRAWCCRSRGSRWRRWWPTGKVLDPRSKWVQEWNRVFLLVCATGLFVDPLFFYVLSVSDTCMCLFVDGWFAVTVTVLRCMTDALHVWNMWLQLKMAKRIFGLGAAAAGGGGDGSSGGVLRDTNPRTVAVGYLKAKTGFFFDIFVILPIPQIVVWVGIPSLLEKGSVTLVMTVLLIMFLLQYLPKIYHAVCHLRRMQNLSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGIERAAKCLKEQCARTDGCGSRILSCKEAIYYGSTRSLVSDRARLAWAGNREARSICLDGSDKYNYGAYKWTVQLVTNDNRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRRLPPGLRQRVRTYERHRWAAMRGVDECEMTSNLPEGLRRDIKYHLCLDLVKQVPLFQHMDELVLENICDRVKSLIFTKGETIAKEGDPVQRMLFVVRGHLQSSQLLRDGVESCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLVTLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFIMPRRPVLRSSSMGEDRLRLYTALLTSPKPNQEDYDF* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0214 697 Gene3D Jelly Rolls 498 616 IPR014710 -
Amo03g0214 697 ProSiteProfiles cAMP/cGMP binding motif profile. 500 610 IPR000595 -
Amo03g0214 697 MobiDBLite consensus disorder prediction 1 46 - -
Amo03g0214 697 Pfam Ion transport protein 87 417 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Amo03g0214 697 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 18 694 - -
Amo03g0214 697 SUPERFAMILY Voltage-gated potassium channels 78 421 - -
Amo03g0214 697 SUPERFAMILY cAMP-binding domain-like 426 614 IPR018490 -
Amo03g0214 697 Pfam Cyclic nucleotide-binding domain 521 608 IPR000595 -
Amo03g0214 697 Gene3D Helix hairpin bin 425 491 - -
Amo03g0214 697 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 18 694 - -
Amo03g0214 697 CDD CAP_ED 500 606 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0214 Amo-Chr3 4162755 4176347 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0214 61 696 Ion Channels AT5G54250 78.616 0.0 1017
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0214 K05391 - gmx:100783341 1125.15