Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0198 CTATTTAAAGATTCATCTTTAGCAACACAACCTTCAATTACAGAGATACCAAGTATAGCTCTAGAAAAATTACAAAGACGTCAACCATGGTCAAAAGCTCATCAATGCTCAAAAATCAAAATTGGGAGCCAAAACAAGGCTCTACGGTCAATATTGAAAAGAAGATTGAAGAAAACGGATGAGAGAGAATGGATAACTTATTTCTTGGAGGCTTATCGCCCTGTCAGAAAAGGAGATTTATTCCTTGTCCAAGGAGGGATGAGAAGTGTAGAGTTCAAGGTCATTGAAACTGATCCTGGGGAGTATTGTGTGGTTGCTCCAGACACTGAAATTTTCTGTGAAGGTGAACCCGTGAAACGGGAGGATGAAGAAAGGCTGGATGAAGTTGGACACGATGATGTGGGTGGTGTTAGGAAGCAAATGGCACAGATCCGTGAGCTTGTAGAGCTTCCACTGAGACATCCTCAGCTTTTTAAGTCGATTGGTGTTAAGCCACCCAAGGGAATTTTGCTCTATGGACCCCCTGGCTCTGGTAAGACACTAATAGCAAGAGCTGTTGCTAATGAAACCGGAGCTTTCTTCTTTTGTATTAATGGTCCAGAGATTATGTCCAAATTGGCCGGAGAGAGTGAAAGCAATCTCAGGAAAGCATTTGAAGAAGCAGAAAAGAATGCTCCATCCATCATATTTATTGATGAGATTGATTCGATTGCACCCAAGCGGGAGAAGACAAATGGTGAAGTTGAAAGGAGGATTGTTTCACAACTTTTGACTCTTATGGACGGATTGAAGTCTCATGCACATGTTATTGTTATTGAAGGTTTTTTTGATAGAGAAATTGACATTGGTGTTCCTGATGAAGTCGGTCGACTTGAAGTCCTTCGCATACATACCAAGAACATGAAGCTTTCTGATGAGGTTGATTTGGAGAGAATATCAAAAGATACTCATGGGTATGTTGGTGCCGACCTTGCTGCTCTTTGCACTGAAGCTGCTCATACTGAGAGAGTGGTTAAAGACAAAGTCTTGGTGTTCAATTTTACTGATGTGGGAAAACTTCCCTCTCCTGTTCTTAACGGCGAGAGAGCCGTTGTGCTATTCTTCATCGCTCATATACTCTTCTCTCTCCCTTTCTCTCTCTTACTCTCCCATGGTGTCCCACTTTCTTTCCTTGCCCTTGCAGCCTCCTTCATTGAGATCAGCTACGACGCTGCCGCTTCTTCCTCTTCCCTCTTCCGCACCAGACGCGGTGCTTCTTCCGGAATCCTCCTCGGCGCCGTGACTCTCCCTGCTCTTCTACTCTCCAAGTTGACGCAATTATCAAGAGGATTCTCATCGGCACAAGTTAATCTTCAAGAGATTCACTATATGACATTGCAATACTGGGCAACATCTGCCACCAGCTTCGTGGTGCTCGTGTTCCTCAGTTTTGTTCTGTCGCACCGCACTCCTCTTTCGCGTAAGGATTGGGGTTTAGGGTTTGGCTTGTGCTTCTTGTTTTTGCAAGCTTCGCTGTGCTTTCTGGCACTTGCTTCCACCTCCTCCCAAAGTGAGAAACATTGTGATTTTTTTCTGTTTCAATTCAGTTATGGAAAATCGTCTTCTATGCAGGCTTTGCAACTTGCATGCAAGCTGTCATGGGTCCTTGGTCATGGATTGGCAGCAGTGATGCTAATTCAGCATTTTCTTGGAACTTTTCCATCTTGTGCTTCCATTGGGGAAGCACTTTTGGTGACAGCTGGTATTGTTCTCTATTTTGGTGACATGCTGTTGCTTACTGTTATGAGGCTATGTGGACTACTGATGTCATCAGATTTGGTCACTGCAGAGTATGAAACTAGTCGAAGTGAGATAGGCATCATAATTCAGGGAGTGCTGCTTGGCCTTCTGCTATATCCAATACCTTTCAAATATATTCTTCGTGTATGGGAATGGTCCACAAATACAGCTTCTGCTGAGTCAAGAAGATACAGTGAGATTAGAAGATCGGTTATTTTTTTTCTCTCTTTGTATTGGTCATGGTTGGGATTGTACCATTATGGATGCAGTTTGTGCATGAATTTCATCTGCATCCTATTCTCTGGTATGATATCGGTCCTATCCTTTGTTTTATCAGATCCATTCAAAAGACTATCACTGTGTATCTATTGGGTTTGTGTAATATGTCTCTCTGTGTTATATGTCTATGACATCTCTAAGAACAGTAGAGTTGAGAGAATTCTTCTGCGGAAATACTACCATCTATTGGCTGTCTTGATGTTTGTACCTGCTCTTATCTTACAGCCAGAGTTTCTTGATCTGGGTTTTGGTGCAGCTCTGGCAGTTTTCTTGACGTTAGAAATTATTCGAATATGGAGAATCTGGCCTTTGGGACAACCAATTCATCAGTTTATGAATGCATTCACTGATCACCGGGATTCTGATTTTCTAATTCTCAGCCACTTCTCACTTTTACTTGGATGTGCACTTCCTATTTGGTTGTCTTCCGGTTACAATGATCGACCCCTTGCTCCTTTTGCGGGAATATTGAGTCTAGGAATTGGAGATACAATGGCATCATTAATTGGGCACAAGTATGGTGTTCTAAGGTGGAGTAAAACTGGCAAGAAAACAATTGAAGGTACTGCAGCTGGTATAACGTCTGTTCTAGCTTCTTGCTGGTTACTCCTTCTATTGTTAGCTTCAAGTGGACACATTTTCACCCAGAATTGGTTCTCGCTGCTTCTATCTGTGACTGTTAGTGGTTTGTTGGAGGCATACACAGCACAACTTGACAATGCATTCATACCACTATTTTTCTATAGCCTTCTATGCTTGTAG 2820 0.4252 LFKDSSLATQPSITEIPSIALEKLQRRQPWSKAHQCSKIKIGSQNKALRSILKRRLKKTDEREWITYFLEAYRPVRKGDLFLVQGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPVKREDEERLDEVGHDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSHAHVIVIEGFFDREIDIGVPDEVGRLEVLRIHTKNMKLSDEVDLERISKDTHGYVGADLAALCTEAAHTERVVKDKVLVFNFTDVGKLPSPVLNGERAVVLFFIAHILFSLPFSLLLSHGVPLSFLALAASFIEISYDAAASSSSLFRTRRGASSGILLGAVTLPALLLSKLTQLSRGFSSAQVNLQEIHYMTLQYWATSATSFVVLVFLSFVLSHRTPLSRKDWGLGFGLCFLFLQASLCFLALASTSSQSEKHCDFFLFQFSYGKSSSMQALQLACKLSWVLGHGLAAVMLIQHFLGTFPSCASIGEALLVTAGIVLYFGDMLLLTVMRLCGLLMSSDLVTAEYETSRSEIGIIIQGVLLGLLLYPIPFKYILRVWEWSTNTASAESRRYSEIRRSVIFFLSLYWSWLGLYHYGCSLCMNFICILFSGMISVLSFVLSDPFKRLSLCIYWVCVICLSVLYVYDISKNSRVERILLRKYYHLLAVLMFVPALILQPEFLDLGFGAALAVFLTLEIIRIWRIWPLGQPIHQFMNAFTDHRDSDFLILSHFSLLLGCALPIWLSSGYNDRPLAPFAGILSLGIGDTMASLIGHKYGVLRWSKTGKKTIEGTAAGITSVLASCWLLLLLLASSGHIFTQNWFSLLLSVTVSGLLEAYTAQLDNAFIPLFFYSLLCL* 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0198 939 CDD AAA 135 272 - -
Amo03g0198 939 Pfam AAA+ lid domain 307 333 IPR041569 -
Amo03g0198 939 SMART CDC48_2_2 55 120 IPR004201 -
Amo03g0198 939 Pfam ATPase family associated with various cellular activities (AAA) 169 272 IPR003959 GO:0005524|GO:0016887
Amo03g0198 939 Gene3D - 57 133 - -
Amo03g0198 939 Gene3D - 134 283 IPR027417 -
Amo03g0198 939 PANTHER BNAC04G12540D PROTEIN 356 939 IPR026566 GO:0004168|GO:0043048
Amo03g0198 939 SMART AAA_5 165 286 IPR003593 -
Amo03g0198 939 PANTHER TRANSMEMBRANE PROTEIN 15-RELATED 356 939 IPR032974 -
Amo03g0198 939 SUPERFAMILY Cdc48 domain 2-like 66 128 IPR029067 -
Amo03g0198 939 Gene3D - 285 344 - -
Amo03g0198 939 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 334 IPR027417 -
Amo03g0198 939 Pfam Cell division protein 48 (CDC48), domain 2 70 119 IPR004201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0198 Amo-Chr3 3839965 3847522 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0198 128 332 Calmodulin-binding Proteins AT3G56690 43.694 6.49e-46 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0198 K00902 - aip:107630092 1519.6