Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0186 ATGGGAGTTCCAGAGAAGGATCCTCTTTCTCAATTGAGCTTACCTCCTGGTTTTAGATTTTACCCCACAGATGAGGAGCTTCTTGTTCAGTACCTATGTCGCAAGGTTGCTGGCAACCATTTCTCACTTCCTATCATCGCGGAAATCGATTTGTATAAATTCGACCCTTGGATCCTCCCAGGTAAAGCAATATTTGGGGAGAAAGAATGGTACTTTTTCAGCCCCAGGGATAGAAAGTATCCGAACGGTTCGCGACCGAACAGGGTTGCTGGCTCTGGGTACTGGAAAGCCACAGGAACAGATAAAGTAATCACTACCGAAGGCAGAAAAGTTGGAATCAAGAAAGCACTTGTTTTCTACATTGGCAAAGCACCCAAAGGCACCAAAACAAACTGGATCATGCACGAGTACCGTCTCCTCAACGGTTCTCAAAAGAGCCTCGGCAGCACCAAGCTAGATGATTGGGTTTTGTGTCGGATATACAAGAAGAACTTGAGCTCATCGCAAAATGTCAATATGCCAAGCTTTACGAGCAAAGAATGGAGCAATGGATCGTCTCCTTCTTCATCGTCTCACATCGACGACATGCTCGAATTGCCGGAGATCGACGACCGGTGCTTCGCCTTACCGCGGGTTAACTCGCTGCAGCACGAGGAAAAGCTCACCCTTGGCGCCACAGGCAATAATTTCCCGGACTGGGTCAACTCGGGGGGTCTCGACTCGGTCCCTGAGTTCGGGAGCCAAACTCAGGGGATGACAAGTTACGATGGAAATGACCTATATGTCCCCTCCGCGTCACAGTTCTGCCACGTCAACACAATGGTTGTGCCGGGTAACCCGACGGAGGAGGAAGTCCAGAGCGGCATCAGGACCCAGCGGATTGATGAGAATTTCGGGTTATTTCAACAGAATTCGAATGTATTCACCCACCGGTATTTGTCGAGTTCGGGTGACTCATTCGGATTCGGATACCCGAATCAGCAATTTGGATTCGGATTCAGAGAATGA 1008 0.4911 MGVPEKDPLSQLSLPPGFRFYPTDEELLVQYLCRKVAGNHFSLPIIAEIDLYKFDPWILPGKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVITTEGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRLLNGSQKSLGSTKLDDWVLCRIYKKNLSSSQNVNMPSFTSKEWSNGSSPSSSSHIDDMLELPEIDDRCFALPRVNSLQHEEKLTLGATGNNFPDWVNSGGLDSVPEFGSQTQGMTSYDGNDLYVPSASQFCHVNTMVVPGNPTEEEVQSGIRTQRIDENFGLFQQNSNVFTHRYLSSSGDSFGFGYPNQQFGFGFRE* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0186 335 PANTHER NAC DOMAIN-CONTAINING PROTEIN 55 1 306 - -
Amo03g0186 335 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Amo03g0186 335 Gene3D NAC domain 23 167 IPR036093 GO:0003677|GO:0006355
Amo03g0186 335 ProSiteProfiles NAC domain profile. 14 163 IPR003441 GO:0003677|GO:0006355
Amo03g0186 335 PANTHER NAC TRANSCRIPTION FACTOR 56 1 306 - -
Amo03g0186 335 SUPERFAMILY NAC domain 10 164 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0186 Amo-Chr3 3660268 3662257 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0186 1 331 NAC Transcription Factor Family AT4G27410 56.410 6.30e-116 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo03g0186 NAM 4.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0186 - - adu:107478293 663.299