Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0148 ATGGCTAGAAAAGGTCTCGGATTTGAAATCACGGAGCTAAGGTTAGGTTTACCCGGCGAACCTAAAAGTTTGGTGAGTACTAATAAGAATGAGAAGAAGAGAATGTTTTCCGAGATTGATGACAACGGTGAGAAAGAGAAGAAGAGTAACACTGGGGGCAACCTGAAGACTACTGAGTCGAAAGCTCAGGTCGTAGGGTGGCCTCCAGTGTGCTCGTACCGGAAGAAGAACAGCATGAATGAGGCTACAAAGATGTATGTGAAGGTTAGCATGGATGGTGCTCCTTTCTTGAGAAAAATTGATTTGGGAATGCATAAGGGATACTCTGAGTTAGCCTTGGCCTTGGAGAAGCTCTTTGGTTGCTATGGAATGGGGGAAGCATTGAAGGATCCAGAGAACTGTGAACACGTTCCCATTTATGAGGACAAAGAGGGTGATTGGATGCTTGTTGGAGATGTTCCTTGGGAAATGTTTATGGAATCATGCAAGAGGCTTAGGATTATGAAGAGATCAGATGCGTGGCAAATTGAAAAGACATATATAGAGATAGATGAAATTAAAGAAAAAAATGTTTAG 576 0.4253 MARKGLGFEITELRLGLPGEPKSLVSTNKNEKKRMFSEIDDNGEKEKKSNTGGNLKTTESKAQVVGWPPVCSYRKKNSMNEATKMYVKVSMDGAPFLRKIDLGMHKGYSELALALEKLFGCYGMGEALKDPENCEHVPIYEDKEGDWMLVGDVPWEMFMESCKRLRIMKRSDAWQIEKTYIEIDEIKEKNV* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0148 191 MobiDBLite consensus disorder prediction 26 52 - -
Amo03g0148 191 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 172 IPR003311 GO:0005634|GO:0006355
Amo03g0148 191 SUPERFAMILY CAD & PB1 domains 77 169 - -
Amo03g0148 191 PANTHER AUXIN-RESPONSIVE PROTEIN IAA6 4 172 - -
Amo03g0148 191 ProSiteProfiles PB1 domain profile. 84 172 IPR000270 GO:0005515
Amo03g0148 191 Pfam AUX/IAA family 31 174 IPR033389 -
Amo03g0148 191 Gene3D - 78 181 - -
Amo03g0148 191 MobiDBLite consensus disorder prediction 18 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0148 Amo-Chr3 2714490 2719945 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0148 21 176 B3 DNA Binding Superfamily AT5G20730 26.471 1.22e-13 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Amo03g0148 AUX_IAA 3.8e-45 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0148 K14484 - gmx:547784 270.781