Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0132 ATGACCTTTACCACCCTTGAAGATGCTGGAAAATTTTACAGGAACTACGCCAAGGTTGCAGGTTTTTCTACAAGAGTTCGGAGCACAAATAGGAAGGAAAACGAGATTAAGAATCAATTGATTACATGTAGTAGAGAGGGAAAATGGAACTCTAAAATATCTCCGACCAAGAAGACAAATTCGACAGCCGGTTTAAACTGTCCTGCAAGAATTTATATACACACATTGAAGGATGTTGGTGCTTGGATCATTTCAAAGATTGTGCTGGATCATTCACACCCTTGCTGTCCAAGTAAAGCAGAAATGCTCAAACAGCACAGGGAACTAAGCATGTCTATTCGTCGTACAATAGAGAATAACGAGGAGGCTGGGATGAGAAGCACACAAAGGAGCGAGAGCATGCATTCATTTTTTAACAAGTTTATTACCCATAACAGCTCGTTTATTCAATTCGTCAAACAATACGATAATTGCCTCGGAAGCAGGGAGCAAGCAGAGAGAGAATCAGATGCTGCAGATTTTCATACGGTCATACCGTGTGCAACCAAATCCTCCATTGAAGCTCAGGAAGTCCAAGCGCAATTCCAAGGAAAGGTGAATTGCATCACTAGATTAACGAATTCTGCTCTAGGCGATTTAGTATATGAGGTTGGAGAACAAGTTTCCAGCTCAATATTCAACAAGTTTGTGGTTACTTACGACTCAGTTGCAGCCGAGATAAAATGTCAATGCTTATTATTCGAGTCGAGAGGGATACTGTGTCGTCACGCACTAAGCGTGTTAAGCTTTGAACAAAAGGTAAAGAGGCGACACACATACATCAAGAGCAGCCACGACGAGCCACTGTTGGAGCCAAGAAGCAAGAGGTTTGTCCAATTGGTTTTTCGTTCGCAAAATATTTGCGAATTTGCATCCGAATCAGAGGAGCTGACTACAATTCTGTACCGTGCGTACGATAACGTCATGGCTGAGATGGAATCATTGAAAGCCAAAAGAAAGGGCACATCTTATTTATCTCACGAAGATGCCAACTTGGAATCCGTTAACGAGCTTCAAAGCCCCCCAAGGATTCAAACAAGAGGACGTCCAAAAAATAAGCTAGGTTCAAAGTTGGACAAACAGATTGCAAATGCCACAAAGAAGAAGAAAACAAAAGTTTTAAGCGAGTGTCAACATCCTCAGAATCTATCTGACAATATGGACTCAATAACAACGAGGATGGCTTGGACAAGTGAAAGATTTATACCTTGTCTTTTGGCCCGAGATGTGAAGCGATCCATAACCACCAATGGTCTGAAAGGCAAACAGGTCCAAGAAGGGTATAAACATTGGGTAGTCTTCCACCCTGAATGGCCTATTAGTTTTAGCGTTTAA 1374 0.4185 MTFTTLEDAGKFYRNYAKVAGFSTRVRSTNRKENEIKNQLITCSREGKWNSKISPTKKTNSTAGLNCPARIYIHTLKDVGAWIISKIVLDHSHPCCPSKAEMLKQHRELSMSIRRTIENNEEAGMRSTQRSESMHSFFNKFITHNSSFIQFVKQYDNCLGSREQAERESDAADFHTVIPCATKSSIEAQEVQAQFQGKVNCITRLTNSALGDLVYEVGEQVSSSIFNKFVVTYDSVAAEIKCQCLLFESRGILCRHALSVLSFEQKVKRRHTYIKSSHDEPLLEPRSKRFVQLVFRSQNICEFASESEELTTILYRAYDNVMAEMESLKAKRKGTSYLSHEDANLESVNELQSPPRIQTRGRPKNKLGSKLDKQIANATKKKKTKVLSECQHPQNLSDNMDSITTRMAWTSERFIPCLLARDVKRSITTNGLKGKQVQEGYKHWVVFHPEWPISFSV* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0132 457 Pfam FAR1 DNA-binding domain 11 96 IPR004330 -
Amo03g0132 457 Pfam SWIM zinc finger 230 262 IPR007527 GO:0008270
Amo03g0132 457 MobiDBLite consensus disorder prediction 343 359 - -
Amo03g0132 457 PANTHER OS03G0843700 PROTEIN 1 108 - -
Amo03g0132 457 MobiDBLite consensus disorder prediction 343 368 - -
Amo03g0132 457 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 126 344 IPR031052 GO:0006355
Amo03g0132 457 ProSiteProfiles Zinc finger SWIM-type profile. 229 265 IPR007527 GO:0008270
Amo03g0132 457 SMART 26again6 240 267 IPR006564 GO:0008270
Amo03g0132 457 PANTHER OS03G0843700 PROTEIN 126 344 - -
Amo03g0132 457 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 1 108 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0132 Amo-Chr3 2432766 2438292 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo03g0132 FAR1 4.1e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0132 - - adu:110280503 462.996