Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0098 ATGGCTTCATTTGCTCTCAGAAACGCAAATTCTAAGCGCCTTCTTCTCTCTTACTCTTCATTCCATCGTGTCCTATCCCATGATCCTTCTTCCCTCTACAGCACTGATGAATCATCTCCTTTCTTGTCCCTTGTTTCTTCTCTTCGGAGATCTATGGCCACTTTCACTCGAACAAAGCCTCATCTTAACGTGGGAACCATTGGCCATGTTGATCATGGAAAAACCACACTAACTGCTGCAATTACAAAGGTGTTATCTGAAGAAGGTAAAGCCAAGGCCATTGCCTTTGAGGAGATAGACAAGGCTCCTGAGGAGAAGAAAAGAGGAATCACTATTGCTACAGCTCATGTAGAGTATGAGACAGCAAAGAGGCACTATGCCCATGTTGATTGCCCGGGGCATGCAGACTATGTTAAGAACATGATAACTGGAGCTGCTCAAATGGATGGTGGAATTCTGGTGGTTTCTGCTCCGGATGGGCCCATGCCTCAAACCAAGGAACATATACTGCTTGCTCGACAGGTTGGTGTGCCATCATTGGTTTGTTTTCTAAACAAGGTTGATGCTGTTGATGACCCAGAGTTACTTGAACTTGTTGAGATGGAGCTTCGCGAGCTACTTAGTTTCTACAAGTTTCCTGGGGAAGAGATTCCAATTGTTCGAGGTTCAGCCCTGTCTGCCTTGCAGGGGACAAATGAAGAACTTGGAAAGAAGGCTATCTTAAAATTAATGGATGCTGTGGATGCATACATTTCTGATCCTGTAAGGCAACTTGATAAGCCTTTCTTAATGCCAATAGAAGATGTTTTCTCTATTCAGGGTGCACCTATGAAGACTACTGTTACTGGTGTGGAAATGTTCAAGAAGATTTTGGATCAAGGGCAAGCTGGTGATAACGTGGGGCTGCTTCTTCGTGGCCTGAAGCGTGACGATATACAGCGTGGAATGGTTATCTCCAAGCCTGGCACATTGAAAACATATAAGAAGTTTGAAGCAGAGATCTATGTCCTCTCTAAAGATGAAGGAGGTCGTCATACTGCATTTTTCTCTAATTATAAGCCTCAGTTTTACATGAGGACTGCAGATATTACCGGAAAGGTGCAGTTACCTGAAAATGTTAAGATGGTCATGCCTGGTGATAATGTGACTGCAAATTTTGAGCTGATGTCACCTGTTCCTCTTGAAGCAGGACAAAGATTTGCGTTGAGAGAAGGAGGCAGAACTGTAGGTGCAGGAGTGGTCTCCAAAGTGATTGCCTAA 1260 0.4413 MASFALRNANSKRLLLSYSSFHRVLSHDPSSLYSTDESSPFLSLVSSLRRSMATFTRTKPHLNVGTIGHVDHGKTTLTAAITKVLSEEGKAKAIAFEEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLSFYKFPGEEIPIVRGSALSALQGTNEELGKKAILKLMDAVDAYISDPVRQLDKPFLMPIEDVFSIQGAPMKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKRDDIQRGMVISKPGTLKTYKKFEAEIYVLSKDEGGRHTAFFSNYKPQFYMRTADITGKVQLPENVKMVMPGDNVTANFELMSPVPLEAGQRFALREGGRTVGAGVVSKVIA* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0098 419 CDD EFTU_III 325 414 - -
Amo03g0098 419 CDD EF_Tu 60 254 IPR041709 -
Amo03g0098 419 Pfam Elongation factor Tu GTP binding domain 59 251 IPR000795 GO:0003924|GO:0005525
Amo03g0098 419 Pfam Elongation factor Tu C-terminal domain 324 417 IPR004160 -
Amo03g0098 419 PANTHER ELONGATION FACTOR TU 36 275 - -
Amo03g0098 419 PANTHER ELONGATION FACTOR TU 277 418 - -
Amo03g0098 419 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 328 419 IPR009001 -
Amo03g0098 419 Hamap Elongation factor Tu [tuf]. 50 419 IPR004541 GO:0003746|GO:0005525|GO:0006414
Amo03g0098 419 PANTHER ELONGATION FACTOR TU-RELATED 36 275 - -
Amo03g0098 419 PANTHER ELONGATION FACTOR TU-RELATED 277 418 - -
Amo03g0098 419 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 100 115 IPR031157 -
Amo03g0098 419 Gene3D Translation factors 274 359 - -
Amo03g0098 419 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 55 270 IPR027417 -
Amo03g0098 419 SUPERFAMILY Translation proteins 256 324 IPR009000 -
Amo03g0098 419 PRINTS GTP-binding elongation factor signature 180 189 IPR000795 GO:0003924|GO:0005525
Amo03g0098 419 PRINTS GTP-binding elongation factor signature 127 137 IPR000795 GO:0003924|GO:0005525
Amo03g0098 419 PRINTS GTP-binding elongation factor signature 107 115 IPR000795 GO:0003924|GO:0005525
Amo03g0098 419 PRINTS GTP-binding elongation factor signature 143 154 IPR000795 GO:0003924|GO:0005525
Amo03g0098 419 PRINTS GTP-binding elongation factor signature 63 76 IPR000795 GO:0003924|GO:0005525
Amo03g0098 419 Gene3D Translation factors 363 418 - -
Amo03g0098 419 Pfam Elongation factor Tu domain 2 277 318 IPR004161 GO:0005525
Amo03g0098 419 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 59 255 IPR000795 GO:0003924|GO:0005525
Amo03g0098 419 Gene3D - 51 254 IPR027417 -
Amo03g0098 419 TIGRFAM small_GTP: small GTP-binding protein domain 63 199 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0098 Amo-Chr3 1818744 1821545 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0098 57 417 Eukaryotic Initiation Factors Gene Family AT5G60390 27.842 1.04e-36 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0098 K02358 - ming:122057582 672.544