Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0090 ATGTTGGGAGGGCTTTTTGAGCGAGTGAGTGAGTGGATTCCATCCATGGCTGCAGTTGCTGAGGTTCCCACTGACATTGCAGCTCCAAATCGATTGGACTCAAAGCCAAAACCAAAGGCAGAATCTGATGAGTTCAATGTGCAAACGCTTGTTGACATCTTCAAAAAACTGAACCCTTTGGCCAAGGAGTTCTTCCCTTCATCTTATTCTCACCAGGGTCACTATCACTCCTCACCCAACCCGTCTCTCCCCAATAATTTTGATGCTGATAGTAACAAAAGGAACCGAAGGAGGCGAGCTAATTATAACCAGGGAGGTAGAAGGTTGAATGGAAGAGTGAAGGCTCAGAGAGAGGATAGTGTTAAAAGAACAGTATATGTTTCTGATATTGATCAGCAGGTTACTGAGGAGCGCCTTGCTGCCATATTCAGCACTTGCGGGCAGGTAATTGACTGCCGAATTTGTGGTGATCCTCATTCAGTTCTTCGTTTTGCATTTGTGGAGTTCACAGATGAAGAAGGTGCAAGGGCAGCTTTAAGACTTGGTGGAACTGTGCTTGGATATTATCCTCTCAAGGTCCTTCCATCAAAAACTGCTATCCTTCCAGTGAATCCTACATTTCTTCCAAGGTCAGCTGATGAGCGGGAAATGTGTACCCGAACCGTCTACTGTACAAATATTGATAAAAAGATTTCTCAAACTGAAGTCAAGAGTTTTTTTGAATCATCTTGTGGTGAGGTCACTCGGCTGAGGCTGTTAGGAGATCGTGTGCATTCGACTCGAATTGCTTTTGTTGAATTTGCAATGGCTGAAAGTGCCATCGTAGCATTAAGTTGTAGCGGGATGCCCTTGGGAACCCAACCTGTCAGGGTAAGTCCTTCTAAAACGCCCGTGAGGACAAGGGTTGCTCGTCCAGCACCTCAGTAA 927 0.4552 MLGGLFERVSEWIPSMAAVAEVPTDIAAPNRLDSKPKPKAESDEFNVQTLVDIFKKLNPLAKEFFPSSYSHQGHYHSSPNPSLPNNFDADSNKRNRRRRANYNQGGRRLNGRVKAQREDSVKRTVYVSDIDQQVTEERLAAIFSTCGQVIDCRICGDPHSVLRFAFVEFTDEEGARAALRLGGTVLGYYPLKVLPSKTAILPVNPTFLPRSADEREMCTRTVYCTNIDKKISQTEVKSFFESSCGEVTRLRLLGDRVHSTRIAFVEFAMAESAIVALSCSGMPLGTQPVRVSPSKTPVRTRVARPAPQ* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0090 308 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 188 IPR000504 GO:0003723
Amo03g0090 308 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 222 287 IPR000504 GO:0003723
Amo03g0090 308 MobiDBLite consensus disorder prediction 71 89 - -
Amo03g0090 308 Pfam Ataxin-2 C-terminal region 53 68 IPR009818 -
Amo03g0090 308 SMART rrm1_1 124 194 IPR000504 GO:0003723
Amo03g0090 308 SMART rrm1_1 221 292 IPR000504 GO:0003723
Amo03g0090 308 Gene3D - 208 302 IPR012677 -
Amo03g0090 308 Gene3D - 76 199 IPR012677 -
Amo03g0090 308 SUPERFAMILY RNA-binding domain, RBD 85 196 IPR035979 GO:0003676
Amo03g0090 308 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 9 16 306 - -
Amo03g0090 308 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 198 IPR000504 GO:0003723
Amo03g0090 308 SUPERFAMILY RNA-binding domain, RBD 211 301 IPR035979 GO:0003676
Amo03g0090 308 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 220 296 IPR000504 GO:0003723
Amo03g0090 308 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 16 306 - -
Amo03g0090 308 MobiDBLite consensus disorder prediction 71 115 - -
Amo03g0090 308 CDD RRM1_CID8_like 121 200 IPR034823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0090 Amo-Chr3 1744325 1748778 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0090 124 293 Eukaryotic Initiation Factors Gene Family AT4G34110 27.586 8.09e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0090 - - jre:108994422 429.098