Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0078 TTTACCACTATTCACATTTGGTTTTATACTTTCATTCAAAGATTTGCGTGTGAAGAGGAGAAATGGGCGGTAGAGATTCGCGATCCGAGGAAAGGTGTTCGCATTTGGCTTGGAACCTTCAACACCACCAAAGAAACCGCCATGACCTATTACAGAGAAGCTTGTAAGATTTGCAGAAAGACAGCTAAAGTGAACTTCTCCAACGAGGATGACGAACACTCCATTCAACAATCTCGCAACATTATTCCAAACTTTCCTCCTCCTCCCATTCGAAGATCGAGTAATCATCTTCCTCTGTATCAATATTGTGATGCCAACAACAACAACATGAACAACCAGACAAGGACTTTGAACCTCAATTTGGAGTTTGGTTACGATCTAAATCATGGAGGAGTTATTGGTGTTGGTGGTGCCATTAACGCAAACCCATTTGTGAGTTGTGTTGATGATAATTCTGAGTATGGGTCTGGTTCTAGTTTGGTATTGGAGGTGGCAGGTGGGTCAAGTGGTGATCAACAACATTAA 525 0.419 FTTIHIWFYTFIQRFACEEEKWAVEIRDPRKGVRIWLGTFNTTKETAMTYYREACKICRKTAKVNFSNEDDEHSIQQSRNIIPNFPPPPIRRSSNHLPLYQYCDANNNNMNNQTRTLNLNLEFGYDLNHGGVIGVGGAINANPFVSCVDDNSEYGSGSSLVLEVAGGSSGDQQH* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0078 174 Gene3D AP2/ERF domain 13 68 IPR036955 GO:0003700|GO:0006355
Amo03g0078 174 CDD AP2 21 66 IPR001471 GO:0003700|GO:0006355
Amo03g0078 174 PANTHER EREBP TRANSCRIPTION FACTOR 21 99 - -
Amo03g0078 174 ProSiteProfiles AP2/ERF domain profile. 8 67 IPR001471 GO:0003700|GO:0006355
Amo03g0078 174 SMART rav1_2 21 73 IPR001471 GO:0003700|GO:0006355
Amo03g0078 174 SUPERFAMILY DNA-binding domain 18 67 IPR016177 GO:0003677
Amo03g0078 174 PANTHER DNA-BINDING DOMAIN 21 99 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0078 Amo-Chr3 1541782 1543941 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0078 21 68 AP2-EREBP Transcription Factor Family AT3G16770 62.500 2.94e-14 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0078 K09286 - gmx:100819416 124.405