Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0074 ATGGTACCCAAAAGCAAGGCTATAAAGGCAGATCCTTGCCAGCCCTCATGGGACCCGCAAGCCTTGCAAGATGTACCAACACAGATAGTGTCTCATGCCTATGACTCAGCTTTTGCCTCTTTTCAATTCCAATATCCATGGCCTTTAGCCTTTGAAGGGTTTCCAGAAGATAGAGCTGCAAGTGCTTCTAAGAGCCATAGCCAAGCAGAGAAAAGAAGAAGGGACAGGATCAATGCACAGTTTGCAACTCTTAGAAAACTGATTCCTAAGTCTGATAAGATAATATTTTATGCTATTCAGAACTGCATAAATTCCATAATTGATTATGCTTTCAAAATCAATTCAACTAGAAGTATGGACAAGGCTGCATTACTAGGGAGTGTAGTAGATCATGTGAAGGATCTAAAGCGAAAAGCGATGGATGTGAGCAAAAGCATCACAGTTCCAAGTGAAACTGATGAAGTAACAATAATAGAGTGTGACCCTGATCAAGATGAAAGCTATGCTAAAGTGAAGATACTAAAGCACAACATTGTAATTTCAGTTTGCTGTGATGATAGACCAGAACTTTTCAGTGAACTCATTCAAGTCCTAAAAGGGTTGAGGCTCATAAATCAAGATCAGAACATATTTAGAAGCAGCAAACAGCTAATAGAAGCAGCAAAACAGAAGCAGCAAAACATACTCAAAATAAAAAAACATCAGAAAATCAGAATCCAAAATCAAGAAGGCAACATAGAACAGGCGAGCAGCATAGAGGAGACAGGAACAGAGTCTTACCGGCGAATGAGGAGGCGGGCTCGGCCGGTGGTGCTCGCGGCTGCTATGGATGGTTGTGGGTGGCGAATGAGGAGGCGGGCTAGGTGA 867 0.4221 MVPKSKAIKADPCQPSWDPQALQDVPTQIVSHAYDSAFASFQFQYPWPLAFEGFPEDRAASASKSHSQAEKRRRDRINAQFATLRKLIPKSDKIIFYAIQNCINSIIDYAFKINSTRSMDKAALLGSVVDHVKDLKRKAMDVSKSITVPSETDEVTIIECDPDQDESYAKVKILKHNIVISVCCDDRPELFSELIQVLKGLRLINQDQNIFRSSKQLIEAAKQKQQNILKIKKHQKIRIQNQEGNIEQASSIEETGTESYRRMRRRARPVVLAAAMDGCGWRMRRRAR* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0074 288 Pfam Helix-loop-helix DNA-binding domain 64 135 IPR011598 GO:0046983
Amo03g0074 288 Gene3D - 56 144 IPR036638 GO:0046983
Amo03g0074 288 PANTHER TRANSCRIPTION FACTOR BHLH30 36 94 IPR045847 GO:0003700|GO:0006355
Amo03g0074 288 PANTHER TRANSCRIPTION FACTOR BHLH51 113 204 - -
Amo03g0074 288 PANTHER TRANSCRIPTION FACTOR BHLH30 113 204 IPR045847 GO:0003700|GO:0006355
Amo03g0074 288 PANTHER TRANSCRIPTION FACTOR BHLH51 36 94 - -
Amo03g0074 288 SMART finulus 67 141 IPR011598 GO:0046983
Amo03g0074 288 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 61 135 IPR011598 GO:0046983
Amo03g0074 288 CDD bHLH_AtAIG1_like 56 158 - -
Amo03g0074 288 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 63 141 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0074 Amo-Chr3 1513675 1515816 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0074 25 203 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 35.106 4.48e-24 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo03g0074 HLH 5.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0074 - - adu:107459448 316.235