Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0069 ATGGATTATTCAACTTCAGATTGTCAGCTAAACCAGGGAGAAGTGGATTTTGAATTTGAATCAAACGAAGTTCTTGAGTCCCTCTGTGTTGTTGATGACCAGTTTGTTCCCAAGGTTGGAATGACTTTTAACACCCTTGAAGATGCTGCAAAATTTTACAAGGATTATGCAAAGGCTGCAGGTTTCTCTACAAGAGTTTGGACCACAAATAAAAAGGGAAACAAAATTAAGAATCAATTGATTACATGTAGCAGAGAGGGAAAATGGAAATCTAAAATATCTCCGACCGAGAAGACAAATCCCACAGCTGGTTTAAATTGTCCTACACGAATTTATATACACACATTGAAAGATATTGGTGCTTGGATTATTTCGAAGGTCGTGTTGTATCATTCACATCCTTGTTGTCCAACTCAGGCAGAGATGCTCAAACAGCACATGGAACTAAACATGTCCATTTGTCGTACAATAGAGAAAACGAGGAAGCTAATCTTTATGACGACCGTCATATATGGAGTTCCAATTTATCTGGATCACCACTTCTGGGCAGGGATGAAAAGCACACAAAGGAGCGAGAGCATGCATTCATTTTTTAACAAGTTCATTACACGGAACAACTCGCTTATCCAATTTGTCAAACAATACGATAATTGCCTTGGAAGTAGGGAGCAAGCAGAGAGAGAATCAGATGCTGCAGATTTTCATACGGTCATACCGTGTGCAACAAAATCTTCCATTGAAGCTCAGTTTCAACATGTGTACACTCACCAAAAGTTTAGGGAAGTCCAAGCACAATTCAGAAGAAAGGCGAATTGCATCACAAGATTAACGAACTCCGCTCTAGGCTATTCAGTATACGAAGTTGGAGAACAAGTTTCCAGCTCAATATTCAACAAGTTTGTGGTTACTTACAACTCAGTAGCAGCCCAAGTGAAATGTCAATGCTTATTATTCGAGTCAAGAGGCATATTGTGCCGTCACGCACTAAGCGTGTTAAGCTTTGAACGAGTAACCCAAGTGTCACCGAGATATATATTGGAACGATGGAGCAAGAAGGTAAAGAGGCAACTCACACACATCAAGAGCAGCCATGACGAGCCACTGTTGGAGCCAAGAAGCAAGAGGTTTGACGAATTGGTTTTTGAGCTTACTGCCATTCTGCACCGTGCATATGGTAACATCATGGTTGAGATGGAAGAACTGAAAGCCAAAAGGAAGGGGACATGTTCGTTATCTCACGAAGATGCCAACTTGGAATCCATTAACGAGCTTCAAAGCCCTCCAAGGGTTCGAACAAGAGGACGTCCAAAAAATAGGCTAGGTTCAAAGTTGGACAAACAGATTGCAAATGTCTCAAAGAAGAAGAAAACGAAAGCTTTAAACGAGTTAAACCTCTTTGATGCTGCATCAGTGGTGCATCCAAATTCCAGCCAATATCAAGGACATGTTATGAATTATCAGTTCAGGAAACTAGCAGCAGGGGATAGTTTTTTGGGTGTATAG 1503 0.4085 MDYSTSDCQLNQGEVDFEFESNEVLESLCVVDDQFVPKVGMTFNTLEDAAKFYKDYAKAAGFSTRVWTTNKKGNKIKNQLITCSREGKWKSKISPTEKTNPTAGLNCPTRIYIHTLKDIGAWIISKVVLYHSHPCCPTQAEMLKQHMELNMSICRTIEKTRKLIFMTTVIYGVPIYLDHHFWAGMKSTQRSESMHSFFNKFITRNNSLIQFVKQYDNCLGSREQAERESDAADFHTVIPCATKSSIEAQFQHVYTHQKFREVQAQFRRKANCITRLTNSALGYSVYEVGEQVSSSIFNKFVVTYNSVAAQVKCQCLLFESRGILCRHALSVLSFERVTQVSPRYILERWSKKVKRQLTHIKSSHDEPLLEPRSKRFDELVFELTAILHRAYGNIMVEMEELKAKRKGTCSLSHEDANLESINELQSPPRVRTRGRPKNRLGSKLDKQIANVSKKKKTKALNELNLFDAASVVHPNSSQYQGHVMNYQFRKLAAGDSFLGV* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0069 500 Pfam SWIM zinc finger 307 333 IPR007527 GO:0008270
Amo03g0069 500 Pfam FAR1 DNA-binding domain 51 136 IPR004330 -
Amo03g0069 500 SMART 26again6 311 338 IPR006564 GO:0008270
Amo03g0069 500 ProSiteProfiles Zinc finger SWIM-type profile. 300 336 IPR007527 GO:0008270
Amo03g0069 500 PANTHER OS03G0843700 PROTEIN 25 148 - -
Amo03g0069 500 PANTHER OS03G0843700 PROTEIN 173 378 - -
Amo03g0069 500 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 25 148 IPR031052 GO:0006355
Amo03g0069 500 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 173 378 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0069 Amo-Chr3 1464681 1467627 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo03g0069 FAR1 7.7e-11 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0069 - - adu:110280503 546.969