Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0063 ATGTACATAGGAAAAACGCGTTTTCAGTTCCTTCATCATAATTGCTCGATATTCCATCAAAGTTTAGTTAAATATCAGATCCAATTAATTTTATATATAATCACCGACAACCGCGTTTTCAAATCTTATAAAACCGGGGGCACTTTCTCCAAGGATTATATACGTAACACCATACTTAGTATCTTCTGTTTTGAGGTGGTGGAAAAAAAAAAAAGCGAATCAGCAAGAAAAGCAGTTTGTCTAGTGAGAATGAAAATGGCGCCTCTTATTATGATTTCATCATGTTTCGTTTGGAATCTCTGTATGGTTCTTATCGGAGTAAGTGTTAGTGTCCCTGTTGAAGCTAAATCTTGGCTTAAAGCTCATGCAACTTTCTATGGGGCCAATCAAAGTCCCATCAGCCTCGGGGGAGCTTGTGGTTATGACAACACCTTTCATGCTGGGTTTGGTGTCAACACTGCGGCGGTGAGCACCATGCTCTTCAGAGGTGGTGAGGCTTGTGGAGCATGCTACCAAGTGATTTGCGACTACCGGGTCGACCCAAAATGGTGCCTCCGGCGACGAAGTGTGACCGTAACTGCCACCAATTTTTGCCCTCCGAACAACCAGGGAGGGTGGTGTGATCCACCTCACCATCACTTTGATATGTCCGCTCCGTCTTTCTTTCGCATTGCAAGACAAGGCAGTGAAGGCATTGTTCCCGTTCTCTATACAAGGGTGCCATGCAAAAGAAGAGGTGGAGTGAGATTCACGTTGAGGGGGCAATCCAATTTCAACATGGTGATGATATCCAACGTGGGAGGCAGCGGGGACGTGAAGGCCGTCTCGATCAAAGGATCGAGAGGTCGCTCGTCTTGGCTGCCCATGCACCGCAACTGGGGAGCCAACTGGCAAAGCAGTGTGGATCTCCGGAACCAGAGGCTCTCATTCAAGCTTACATTGGCAGATGGGAAGACACTGCTGTTCCTCAATGTTGTTCCTTCTAGTTGGAGGTTTGGACAGACGTTTTCATCAAGAAACCAGTTCTCTTGA 1032 0.4641 MYIGKTRFQFLHHNCSIFHQSLVKYQIQLILYIITDNRVFKSYKTGGTFSKDYIRNTILSIFCFEVVEKKKSESARKAVCLVRMKMAPLIMISSCFVWNLCMVLIGVSVSVPVEAKSWLKAHATFYGANQSPISLGGACGYDNTFHAGFGVNTAAVSTMLFRGGEACGACYQVICDYRVDPKWCLRRRSVTVTATNFCPPNNQGGWCDPPHHHFDMSAPSFFRIARQGSEGIVPVLYTRVPCKRRGGVRFTLRGQSNFNMVMISNVGGSGDVKAVSIKGSRGRSSWLPMHRNWGANWQSSVDLRNQRLSFKLTLADGKTLLFLNVVPSSWRFGQTFSSRNQFS* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0063 343 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 136 247 IPR007112 -
Amo03g0063 343 PRINTS Expansin signature 246 258 IPR002963 GO:0009664
Amo03g0063 343 PRINTS Expansin signature 204 221 IPR002963 GO:0009664
Amo03g0063 343 PRINTS Expansin signature 190 200 IPR002963 GO:0009664
Amo03g0063 343 PRINTS Expansin signature 295 316 IPR002963 GO:0009664
Amo03g0063 343 PRINTS Expansin signature 148 162 IPR002963 GO:0009664
Amo03g0063 343 PRINTS Expansin signature 324 340 IPR002963 GO:0009664
Amo03g0063 343 PRINTS Expansin signature 177 188 IPR002963 GO:0009664
Amo03g0063 343 PRINTS Expansin signature 258 279 IPR002963 GO:0009664
Amo03g0063 343 Gene3D - 247 343 IPR036749 -
Amo03g0063 343 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 257 338 IPR007117 -
Amo03g0063 343 PRINTS Expansin/Lol pI family signature 286 300 IPR007118 GO:0005576
Amo03g0063 343 PRINTS Expansin/Lol pI family signature 157 175 IPR007118 GO:0005576
Amo03g0063 343 PRINTS Expansin/Lol pI family signature 117 132 IPR007118 GO:0005576
Amo03g0063 343 PRINTS Expansin/Lol pI family signature 135 153 IPR007118 GO:0005576
Amo03g0063 343 PRINTS Expansin/Lol pI family signature 230 246 IPR007118 GO:0005576
Amo03g0063 343 PRINTS Expansin/Lol pI family signature 324 338 IPR007118 GO:0005576
Amo03g0063 343 Pfam Lytic transglycolase 153 237 IPR009009 -
Amo03g0063 343 Gene3D - 106 243 IPR036908 -
Amo03g0063 343 PANTHER EXPANSIN-A15 92 343 IPR002963 GO:0009664
Amo03g0063 343 PANTHER EXPANSIN-A12 92 343 - -
Amo03g0063 343 SUPERFAMILY Barwin-like endoglucanases 117 265 IPR036908 -
Amo03g0063 343 Pfam Expansin C-terminal domain 248 327 IPR007117 -
Amo03g0063 343 SUPERFAMILY PHL pollen allergen 244 338 IPR036749 -
Amo03g0063 343 SMART dpbb_1 153 237 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0063 Amo-Chr3 1413129 1416628 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0063 102 341 Expansin Gene Family AT3G15370 61.481 4.02e-118 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0063 - - ahf:112735861 569.696