Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0053 ATGAAGAAAGAAAAGGAGCATTCCGACCCTTGGCATCCGACGGAGCTCGGCCACAAGTCCGACGGCCAGACGATCGAGTGGCTCCTATGCCAGGCCGAGCCCTCAATCATCGCCGCCACCGGAACCGGAACCACTCCCGCCAGCTTCTCCTCCGTTTCTGTCTCCGTACGCGGCGGTGCTGGCTCTCTCTCTTCTCCTTCCTCAACCTCCGCATCGTCTTCGCTCGACCACAAGCCCTTGCTCGCTCCCACTCCCTTCATACTCAGCAAGTGCATACGCACTGACGACGACGCTTCCGCCAAGGACGATGACGTCTCCGTGGGTCCCGCCGTGGGGTCCTTAGTGATTGCTATTTCAGATAAAACTGAGATTTTTTCATAA 381 0.5774 MKKEKEHSDPWHPTELGHKSDGQTIEWLLCQAEPSIIAATGTGTTPASFSSVSVSVRGGAGSLSSPSSTSASSSLDHKPLLAPTPFILSKCIRTDDDASAKDDDVSVGPAVGSLVIAISDKTEIFS* 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0053 126 MobiDBLite consensus disorder prediction 56 77 - -
Amo03g0053 126 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 15 112 - -
Amo03g0053 126 MobiDBLite consensus disorder prediction 56 80 - -
Amo03g0053 126 ProSiteProfiles TCP domain profile. 1 39 IPR017887 -
Amo03g0053 126 Pfam TCP family transcription factor 15 73 IPR017887 -
Amo03g0053 126 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 15 112 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0053 Amo-Chr3 1240706 1241086 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0053 15 108 TCP Transcription Factor Family AT5G23280 62.887 2.99e-30 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Amo03g0053 TCP 1.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0053 K16221 - aip:110269354 160.999