Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0049 ATGGACTTAGGAAGTCATTATGTACTTTTGTGGACTAAAAGTATTGGTGTTTACATGTGCAGAATGTGCTACAGCAGCTGCAGTAATTGCAGGATTGTTGAGTATTTGTTACTTTATATACAAGTTACCAAGATGGCGAGAAAGATACAGCTTTCTGACAAAAGATATAAATTCTTTGATGTGAAGAAAATGACCAACTCCTTCAAAGTTAAACTAGGACAAGGTGGTTTTGGTGTTGTATACAAGGGAAAGTTATTCAATGGTTTTAATGTGGCCGTCAAAATGTTGAATCCATCCAAAGAAAATAGTAAAGAGTTTATCAATGAGGTAGATAGCATTAGTAGAACTTCTCATGTTAATGTCGTCACCCTTTTTGGATTTTGCTTTGAAGGCCACAAGAAATTTATTTACAGAAATAAAGGAGTTGAAACTACTACATTGTTGAGTTGGAATAAGCTGTATCGAATTGCCAAAGGGATACCGCATAATATTCTTTTGGATGAAAATTTTTGTCCTAAGATATCAGATTTTGGACTAGCAAAACTGTCCTAG 552 0.3442 MDLGSHYVLLWTKSIGVYMCRMCYSSCSNCRIVEYLLLYIQVTKMARKIQLSDKRYKFFDVKKMTNSFKVKLGQGGFGVVYKGKLFNGFNVAVKMLNPSKENSKEFINEVDSISRTSHVNVVTLFGFCFEGHKKFIYRNKGVETTTLLSWNKLYRIAKGIPHNILLDENFCPKISDFGLAKLS* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0049 183 ProSiteProfiles Protein kinase domain profile. 66 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo03g0049 183 Gene3D Phosphorylase Kinase; domain 1 36 138 - -
Amo03g0049 183 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 161 182 - -
Amo03g0049 183 Pfam Protein tyrosine and serine/threonine kinase 68 135 IPR001245 GO:0004672|GO:0006468
Amo03g0049 183 PANTHER RUST RESISTANCE KINASE LR10-RELATED 161 182 IPR045874 GO:0004672
Amo03g0049 183 PANTHER RUST RESISTANCE KINASE LR10-RELATED 50 160 IPR045874 GO:0004672
Amo03g0049 183 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 50 160 - -
Amo03g0049 183 ProSitePatterns Protein kinases ATP-binding region signature. 72 94 IPR017441 GO:0005524
Amo03g0049 183 Gene3D Transferase(Phosphotransferase) domain 1 161 183 - -
Amo03g0049 183 SUPERFAMILY Protein kinase-like (PK-like) 54 182 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0049 Amo-Chr3 1192208 1193549 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0049 36 182 Receptor kinase-like Gene Family AT4G18250 43.523 6.16e-39 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Amo03g0049 PK_Tyr_Ser-Thr 1.2e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0049 - - adu:107490347 210.305