Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0044 GCAAACTCATTATGTTTTCAGATATATGTTGTTCAACATCGATGGTCATCAAGTTCCACAACAGACATTGTGTTGTTTTTGATTTGCTTGTCAACAACAATATATGTAAGGAGACCAAGATTTTCCTGGTATTATACCACTGGCTATAAAAGACTTTTAACCTTGGAAAAAATTTGTGAAATTTTGCAGTTAAAGACATTCAAAATATCTAGGGAAGGTTATGTTCTGCTTCAGTTTGCACCCGCAAGTGCTTCGTGGCAGTATAATTGGACTAGAAAGCAGGTGTTCTCATTATCAGTGGGTGAAATGGGAACTGTGATTAGCCTTGGTAAAAGGGAGTCTTGTGAATTCTTCCATGATCTACCGTCAGATTTACCGTCGGATTCTTCAAATATATTCGACGGTAATTATTTACCATGTCACGCGGGTGAGGATATCCTGATACCTCTCCCGAGAATCATTAAACTTCTGAGCCTGCCGTGGCAGAGCCTGACGACGGCCTTAACATCGAGGTATGGAGGCTACTGGTGA 531 0.4049 ANSLCFQIYVVQHRWSSSSTTDIVLFLICLSTTIYVRRPRFSWYYTTGYKRLLTLEKICEILQLKTFKISREGYVLLQFAPASASWQYNWTRKQVFSLSVGEMGTVISLGKRESCEFFHDLPSDLPSDSSNIFDGNYLPCHAGEDILIPLPRIIKLLSLPWQSLTTALTSRYGGYW* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0044 176 SUPERFAMILY ssDNA-binding transcriptional regulator domain 61 124 IPR009044 GO:0003677|GO:0006355
Amo03g0044 176 Pfam Whirly transcription factor 63 120 IPR013742 GO:0003697|GO:0006355|GO:0006952
Amo03g0044 176 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 66 121 IPR013742 GO:0003697|GO:0006355|GO:0006952
Amo03g0044 176 Gene3D Transcriptional Coactivator Pc4; Chain A 33 132 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0044 Amo-Chr3 1050354 1052712 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g0044 9 120 Whirly Transcription Factor Family AT2G02740 44.828 2.32e-23 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Amo03g0044 Whirly 7.3e-21 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0044 - - adu:107478549 113.62