Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g2689 AGGCAGCAATTAGGGTTCCAAATTGGGCGTGCATCTCATCAGAAGAAGAAAACAATGGTGTCGGGTTCAGGGATATGCGCAGCGCGTGTGGTGGTCGACGCGCGGCACCACATGCTCGGTCGTCTTGCGTCGATAGTGGCGAAGGAGCTTCTGAACGGTCAGAAGGTGGTGGTGGTGAGGTGCGAGGAGATCTGCATCTCCGGCGGTCTCGTTAGGCAGAAGATGAAGTACATGCGGTTCCTCCGTAAGAGGATGAACACTAAACCCTCTCATGGCCCCATCCATTTCCGCGCTCCTTCCAAGATCTTCTGGCGCACGGTTCGCGGCATGATTCCTCACAAGACGAAGCGCGGCGAAGCTGCTCTTGCTCGCTTGAAGGTTTTCGAGGGAATCCCTCCTCCTTATGATAAGACGAAGAGGATGGTGATCCCTGATGCTCTCAAGGTTTTGAGGCTTCAGAAGGGGCACAAATTCTGCTTGCTTGGTAGATTGTCATCTGAAGTTGGATGGAATTATTATGATACCATCACGGAATTGGAGAAGAAGAGGAAGGAGAAGGCGCATTTGTTGTACGAGAGAAAGAAGCAGCTWAACAAATTGAGGGTGAAAGCTGAGAAGGTTGCTGAGGAGAAGCTTGGTTCCCAACTTGATATCCTTGCTCCAGTCAAGTACTGA 675 0.5126 RQQLGFQIGRASHQKKKTMVSGSGICAARVVVDARHHMLGRLASIVAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGEAALARLKVFEGIPPPYDKTKRMVIPDALKVLRLQKGHKFCLLGRLSSEVGWNYYDTITELEKKRKEKAHLLYERKKQLNKLRVKAEKVAEEKLGSQLDILAPVKY* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g2689 224 Pfam Ribosomal protein L13 30 133 IPR005822 GO:0003735|GO:0005840|GO:0006412
Amo02g2689 224 TIGRFAM L13_A_E: ribosomal protein uL13 30 172 IPR005755 GO:0003735|GO:0006412|GO:0015934
Amo02g2689 224 Gene3D - 174 224 - -
Amo02g2689 224 Hamap 50S ribosomal protein L13 [rplM]. 29 153 IPR005822 GO:0003735|GO:0005840|GO:0006412
Amo02g2689 224 ProSitePatterns Ribosomal protein L13 signature. 107 130 IPR023563 GO:0003735|GO:0005840|GO:0006412
Amo02g2689 224 SUPERFAMILY Ribosomal protein L13 30 172 IPR036899 GO:0003735|GO:0005840|GO:0006412
Amo02g2689 224 Gene3D Ribosomal protein L13 26 172 IPR036899 GO:0003735|GO:0005840|GO:0006412
Amo02g2689 224 CDD Ribosomal_L13 30 131 IPR005822 GO:0003735|GO:0005840|GO:0006412
Amo02g2689 224 PANTHER 60S RIBOSOMAL PROTEIN L13A-4 19 224 - -
Amo02g2689 224 PANTHER RIBOSOMAL PROTEIN L13 19 224 IPR005822 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g2689 Amo-Chr2 83647624 83648712 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g2689 19 224 Cytoplasmic Ribosomal Protein Gene Family AT5G48760 90.777 1.85e-141 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g2689 K02872 - gmx:100499978 396.356