Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g2644 ATGTCTTTCACTACTTTCAGTGGCTTACTTTCAAGAAGGTACAACAACACGAGCATGGTTGATGATAATTGTTGGGAAACTTCTATACCTAGAACTGGTGATGATAATCACGGTGAATTTTTTTCATCAATAATTTACCCTTCTTACTCTGATTTCCCACCTGGTTTCAATCCCAATGAGTTCTTGGATGCATTTCTTTCTGAATCAAATAGTTTAAACTGGAGAAACAGTTCAAGTGAGAATCAACAAAGTAAGGAAGTGGAAGAAAAGTACTACTCTGACCCCTCTACTGATGTGTCTCTCTTACAATCCTCCTCAAACATTTTTGAAGAGGGAGACCCACAAAGAAAGCAGGACACATTTACAATCCTTGAATCTGGCATGCTTGTTGATTTTTCATCGCCGATGACAAATACAACAAATTTTCAAGATCCATATCTCCGCAACTTCTCTGAAATGGCCTTAGCCGTTCCCGAAATACATAGCACTTTAGCTCCTCAACTAAATTGTCATAAATCTATTAACGAAGATGAGGACGGAGATCTAAACGATGGATACAATTGGAGGAAATATGGAGAGAAACGGACGAAAGGAGGCGAAAATCCCCGGAGTTATTACAGGTGCGGAGAACCAAATTGCACGATGAAGAAGAAAGTTGGGAGAAACTTGGATGGAAAAATCATTGCCATTATGTACAAGGGAAATCACAACCATCCCAACCCTTCTAAACCTGTTGGAAGTGCAAATGTTCCATTAGTTAATGAACTTTATGCATCATCATACACCGACTCGGGGAATTTGAATCAACAATCTGTTGGAGGTGTTGAAAATCAACTTGGAGCACACACCAAAAGATTGAAAGGAGGGAATGGAATCTATAGCTATTTGTTTAATCCGAGTGGGGGCAGAGCTATAAAGGAACCCAGAGTTGTAGTTCAAACTACAACTGAAATTGACATTCTTGACGATGGCTATAGGTGGAGGAAATATGGCCAGAAAGTTGTTAAGGGAAACCCAAACCCAAGGAACTACTACAAGTGTGTGAGTCCAGGTTGTAACGTGAAGAAACATGTGGAGAGAGCTGCAGATGACATAAAGTCTGTGATGACAACCTATGAAGGCAAACACAACCATGATGTTCCTCAAGAAAGATCATCCTTTGCATCTCGCATAGCATCACTCACCAACAACTTTGCAACCCCATCATCATCATCGTCACCTTCTCTTCATGACACAAGCCTATCACTATCTTCACCAAGGGCCAACAATGAAAATCAAGCAAGTCAAGAACTTACTACTCTTCCCTTCATTGTTGGAATTCCAAATTTTGGTAGGTCACTGATTGGTACTTCATATGCCAATGAGGGACCAAGCTCAAACAATGAAGAGAAGAAGGATTAG 1401 0.4033 MSFTTFSGLLSRRYNNTSMVDDNCWETSIPRTGDDNHGEFFSSIIYPSYSDFPPGFNPNEFLDAFLSESNSLNWRNSSSENQQSKEVEEKYYSDPSTDVSLLQSSSNIFEEGDPQRKQDTFTILESGMLVDFSSPMTNTTNFQDPYLRNFSEMALAVPEIHSTLAPQLNCHKSINEDEDGDLNDGYNWRKYGEKRTKGGENPRSYYRCGEPNCTMKKKVGRNLDGKIIAIMYKGNHNHPNPSKPVGSANVPLVNELYASSYTDSGNLNQQSVGGVENQLGAHTKRLKGGNGIYSYLFNPSGGRAIKEPRVVVQTTTEIDILDDGYRWRKYGQKVVKGNPNPRNYYKCVSPGCNVKKHVERAADDIKSVMTTYEGKHNHDVPQERSSFASRIASLTNNFATPSSSSSPSLHDTSLSLSSPRANNENQASQELTTLPFIVGIPNFGRSLIGTSYANEGPSSNNEEKKD* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g2644 466 SUPERFAMILY WRKY DNA-binding domain 181 241 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo02g2644 466 SMART WRKY_cls 321 380 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo02g2644 466 SMART WRKY_cls 182 240 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo02g2644 466 ProSiteProfiles WRKY domain profile. 177 241 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo02g2644 466 SUPERFAMILY WRKY DNA-binding domain 313 381 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo02g2644 466 Gene3D WRKY domain 170 242 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo02g2644 466 Gene3D WRKY domain 306 382 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo02g2644 466 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 42 403 IPR044810 GO:0003700
Amo02g2644 466 Pfam WRKY DNA -binding domain 322 378 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo02g2644 466 Pfam WRKY DNA -binding domain 183 239 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo02g2644 466 MobiDBLite consensus disorder prediction 398 427 - -
Amo02g2644 466 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 42 403 - -
Amo02g2644 466 ProSiteProfiles WRKY domain profile. 316 381 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g2644 Amo-Chr2 82792368 82798222 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g2644 173 407 WRKY Transcription Factor Family AT2G38470 47.464 1.14e-69 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo02g2644 WRKY 1.5e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g2644 K13424 - gmx:102666898 332.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2409 12 106554857 106560991 Amo02g2644 02 82792368 82798222 hybridization