Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo02g2618 | ATGTTGATACATACAACTTTTCTTCCTTTCTATTTTGCACTTTATTATATACACACATCCCCAATTTTAGTTCTACATATCTTATGTCTTATTTTGAAATATATGTCTAGTATTTTTCGAAAATGGAGGAAATTGGAGAAGCTAGTGAAGCAACATGGTATAAGGAAGTGGTCACAAATAGCTGAGAAATTGGAGGGAAGGGTTGGGAAGCAGTGTAGAGAGAGGTGGCATAATCATCTCCGCCCTGATATTAAGGTTCCTTCGAATACCCGGACGAACCGAAAACTCGATCAAAAACCATTGGAACGCAACAAAAAGAAGACAGAACTCAAGGGAAAGAACAAGAAGCCATCATCATCATCAACCACCTCAAACAATAATGGCAAACCCCAATCTTCAATTCTTGAAGACTACATTAGAAGCAAAACCCTAATTGGTACCAATAATATCACTGCTCCTATTACTACTACCACTACTAATTCAACACCAACTATTACTAGTGAATCTGAATCTATCACTAATAATAGTGATAATAATAATAATAATCCATATTATTCATCACCAACAATCATAGCTGAATCATCGTATGATGATGAGTTACTCTTCATGCAACAACTTTTCAAAGAGAATAATCAAATTGTCAATGGAGATGCTGTTATTAAGAACACTAACGATGAATGTGGTGATGGGTTTGTTCATTATTCCAATTATTATTATCCTCCAAATCCAGGGAACATGCACAACTCCATCATCAATTGA | 759 | 0.3518 | MLIHTTFLPFYFALYYIHTSPILVLHILCLILKYMSSIFRKWRKLEKLVKQHGIRKWSQIAEKLEGRVGKQCRERWHNHLRPDIKVPSNTRTNRKLDQKPLERNKKKTELKGKNKKPSSSSTTSNNNGKPQSSILEDYIRSKTLIGTNNITAPITTTTTNSTPTITSESESITNNSDNNNNNPYYSSPTIIAESSYDDELLFMQQLFKENNQIVNGDAVIKNTNDECGDGFVHYSNYYYPPNPGNMHNSIIN* | 253 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo02g2618 | 252 | CDD | SANT | 43 | 80 | IPR001005 | - | |
| Amo02g2618 | 252 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 43 | 84 | IPR017930 | - | |
| Amo02g2618 | 252 | MobiDBLite | consensus disorder prediction | 79 | 134 | - | - | |
| Amo02g2618 | 252 | ProSiteProfiles | Myb-like domain profile. | 43 | 80 | IPR001005 | - | |
| Amo02g2618 | 252 | PANTHER | MYB PROTEIN-RELATED | 43 | 84 | - | - | |
| Amo02g2618 | 252 | MobiDBLite | consensus disorder prediction | 155 | 181 | - | - | |
| Amo02g2618 | 252 | SMART | sant | 38 | 82 | IPR001005 | - | |
| Amo02g2618 | 252 | MobiDBLite | consensus disorder prediction | 115 | 134 | - | - | |
| Amo02g2618 | 252 | MobiDBLite | consensus disorder prediction | 79 | 108 | - | - | |
| Amo02g2618 | 252 | Gene3D | - | 41 | 86 | - | - | |
| Amo02g2618 | 252 | Pfam | Myb-like DNA-binding domain | 42 | 87 | - | - | |
| Amo02g2618 | 252 | SUPERFAMILY | Homeodomain-like | 43 | 91 | IPR009057 | - | |
| Amo02g2618 | 252 | PANTHER | TRANSCRIPTION FACTOR MYB119-RELATED | 43 | 84 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo02g2618 | Amo-Chr2 | 82431199 | 82433123 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo02g2618 | 43 | 215 | MYB Transcription Factor Family | AT5G11050 | 36.946 | 8.10e-22 | 91.7 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB-related | Amo02g2618 | Myb_DNA-bind_6 | 8.3e-11 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo02g2618 | K09422 | - | gmx:100786295 | 121.709 |