Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g2581 TTGCTTCGATCAAATCTTTCCCGCGTTCGCATCCGACCCACCAATCGCATCTTCAAGCATGAATGCTGCCTCTCCTTCGATACACCCAAGTCAGAGGGTGGGTTGTACATCGACATGTTCACTTTCCTTGCCTTTGGGAAGGACTGTGTGGGTTGGAATTTCGAGAAGACTGGTAACCCTGTTTATTTRCATGTAAAGAAGACYAAGAARCTGGTTCCAGAAGACAGGCCTACCAAGAAACCAACCCGCTTGGCGATAGGGGTTGAAGGGGGATTCGACAACAATGAACCCGAATATGAAGAAACTCATAWTATAGTCATTTTACCAAACTATATATCTCTTCCATTCCCATCTGTTGAATTGCCAGAGAAGGTAAGGTTGGCTGCAGATGCTATAGTACTAGCTGAGGGTGCTGAACGGAAGGAGCAGGTTGCAGCTTGGACTGCTGATAAGAAAACAGTTAGTACCTATGCAATGAATTTACAGCAACTTGACAATGGTGTTGTCATYCCTCCGTCTGGTTGGAAATGTGCCAAGTGTGACAAGACGGATAATCTTTGGCTAAATCTGACTGATGGGATGATTCTTTGTGGGAGGCGAAATTGGGATGGAAGTGGTGGAAACAACCATGCTGTTGAGCATTACAATGAGACAGGCTACCCTCTTGCTGTAAAGCTCGGGACTATCACTGCTGATTTGGAAGCAGCAGACGTTTACTCATATCCAGAGGACAACAGCGTCTTAGACCCACATCTAGCACAGCATCTGGCCTTTTTTGGCATTGACTTCTCATCACTRCAAAAGACTGAAATGACGACCGCCGAAAGAGAACTTGATCACAATACCAATTTCAATTGGAATCGGATCCAAGAAAGTGGAGAGGAAAAGGAACCAATTTTTGGACCTGGATACACGGGATTGGTCAATCTTGGCAACAGTTGTTACTTGGCAGCAACTATGCAAGTTGTGTTCACAACAAGATCATTCTGTTCAAGGTACTATATAAACCAAAGTCTGAAAAAGGCATTTGAGACGGCTCCTGCTGATCCAACCGTGGACTTGAATATGCAACTGACAAAACTGGCCCATGGTCTACTATCTGGCAAATATTCTATGCCAGTCTATGAGGTGCGTAACCATCAATACATTTCTGTTGAAGATATCATTGATGCCACAACTAAGACTCCAAAACAGGAAGGGATACCTCCACGTATGTTCAAGTCTGTGATTGCTGCCAGTCATCCTGAATTTTCATCTATGCGGCAACAGGATGCTTTAGAATTTTTCCTTCATTTTCTCGATCAAGTTGAAAKATCTAATGCTGGGAAAGCTGAACTAGATCCTGCAAAGTGTTTCAAGTTTGGTATTGAAGATCGAATCTTGTGTTCATCTGGAAAAGTTGCATATAATAAAAGACRAGACTACATTCTATCTCTTAATATCCCATTGCACGAAGCAACTAATAAAGAAGAAATGGAATTATTTCGCAAATTGAAAGCAGAGAAGCTTTCTGAAGGGAAGGATGTGTCGGCCGASGAGATTGTACGTCCAAGAGTTCCTTTAGAAGCTTGCCTTAGAAACTTCTCAGCTCCAGAGGAGATACATGATTTTTACAGCACTGCCTTAAAAGCAAAGACAACAGCATTGAAGACAGCTGGTTTCACATCATTCCCTGATTACCTTGTGTTACATATGAGGSAATTCGTYATGGAGGAGGGATGGGTGCCCAAAAAGCTTGATGTGTACATAGATGTTCCTGATATCATAGATATTAATCATATGCGTAGCAAAGGTCATCACCCAGGGGAAGAACTGTTACCAGATGCGGAACCCATTGACGAGGATTCAAACCARCCTTCCGCCAATGAAGACATTGTGGCACAGCTGGTTTCCATGGGTTTTAACCAGCTTCATTGTCAGAAGGCAGCTATTAACACCTCAAATGCTGGAGTAGAGGAGGCAATGAATTGGTTACTATCTCACATGGATGATCCAGATATTGACAGTCCTATTTYAAAAGGWAACAGCTCTGACAACGTTGATCAATCAAAAGTGGACATACTCATTTCTTTTGGATTTGAAGATCATGTTGCTCGAAAGGCATTGAAGGCATCGGGTWAAGACATTGAGAAGGCAACAGAGTGGATATTCAGCAATCCCRATGCATCAGTTTCTAGTATGGATGCTAGTGCATCAAACACAACCTCTGCTTCAAATGATGTTGGCTTGTCAGATGGAGGAGGAAAATATCGACTTATAGGAATTGTTAGCCACATGGGAACCTCGACACATTGTGGTCACTATGTAGCTCACATTTTGAAAGAAGGTAGATGGGTTATTTTCAATGACGCCAAGGTTGCGGTTTCGGTCCCAAGGACATGGGCTATCTATATTTTTTCGAGAGGATTGATGGTTGAATTAGATACTGTTTTTTTGATCACATGTTTGAACATTGTGATGATGAACATTTCATCTGTAAAGAGGATAGAATGGCACAAACCAGCTACCTGCACTACATACCTTTCTTGGTGGCATGGTAAACACTCATCTTTGGCTGTACCATTATTTTTTGGGTCTGCCAGTTGTGCTTCCATTCTGTGA 2601 0.4225 LLRSNLSRVRIRPTNRIFKHECCLSFDTPKSEGGLYIDMFTFLAFGKDCVGWNFEKTGNPVYLHVKKTKKLVPEDRPTKKPTRLAIGVEGGFDNNEPEYEETHXIVILPNYISLPFPSVELPEKVRLAADAIVLAEGAERKEQVAAWTADKKTVSTYAMNLQQLDNGVVIPPSGWKCAKCDKTDNLWLNLTDGMILCGRRNWDGSGGNNHAVEHYNETGYPLAVKLGTITADLEAADVYSYPEDNSVLDPHLAQHLAFFGIDFSSLQKTEMTTAERELDHNTNFNWNRIQESGEEKEPIFGPGYTGLVNLGNSCYLAATMQVVFTTRSFCSRYYINQSLKKAFETAPADPTVDLNMQLTKLAHGLLSGKYSMPVYEVRNHQYISVEDIIDATTKTPKQEGIPPRMFKSVIAASHPEFSSMRQQDALEFFLHFLDQVEXSNAGKAELDPAKCFKFGIEDRILCSSGKVAYNKRXDYILSLNIPLHEATNKEEMELFRKLKAEKLSEGKDVSAXEIVRPRVPLEACLRNFSAPEEIHDFYSTALKAKTTALKTAGFTSFPDYLVLHMRXFVMEEGWVPKKLDVYIDVPDIIDINHMRSKGHHPGEELLPDAEPIDEDSNQPSANEDIVAQLVSMGFNQLHCQKAAINTSNAGVEEAMNWLLSHMDDPDIDSPIXKGNSSDNVDQSKVDILISFGFEDHVARKALKASGXDIEKATEWIFSNPXASVSSMDASASNTTSASNDVGLSDGGGKYRLIGIVSHMGTSTHCGHYVAHILKEGRWVIFNDAKVAVSVPRTWAIYIFSRGLMVELDTVFLITCLNIVMMNISSVKRIEWHKPATCTTYLSWWHGKHSSLAVPLFFGSASCASIL* 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g2581 866 Pfam UBA/TS-N domain 622 658 IPR015940 -
Amo02g2581 866 Pfam UBA/TS-N domain 681 716 IPR015940 -
Amo02g2581 866 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 679 719 IPR015940 -
Amo02g2581 866 Pfam Zn-finger in ubiquitin-hydrolases and other protein 177 251 IPR001607 GO:0008270
Amo02g2581 866 Gene3D Cysteine proteinases 298 799 - -
Amo02g2581 866 SMART uba_6 622 660 IPR015940 -
Amo02g2581 866 SMART uba_6 681 718 IPR015940 -
Amo02g2581 866 SMART Zf_UBP_1 176 231 IPR001607 GO:0008270
Amo02g2581 866 SUPERFAMILY Cysteine proteinases 301 788 IPR038765 -
Amo02g2581 866 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 8 791 - -
Amo02g2581 866 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 750 768 IPR018200 GO:0004843|GO:0006511
Amo02g2581 866 Pfam Ubiquitin carboxyl-terminal hydrolase 305 789 IPR001394 GO:0004843|GO:0016579
Amo02g2581 866 MobiDBLite consensus disorder prediction 594 619 - -
Amo02g2581 866 Gene3D - 618 655 - -
Amo02g2581 866 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 100 IPR013083 -
Amo02g2581 866 Gene3D - 656 724 - -
Amo02g2581 866 ProSiteProfiles Zinc finger UBP-type profile. 153 263 IPR001607 GO:0008270
Amo02g2581 866 CDD Peptidase_C19B 306 790 - -
Amo02g2581 866 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 8 791 - -
Amo02g2581 866 Pfam Variant UBP zinc finger 13 70 IPR041432 -
Amo02g2581 866 PIRSF UBP 2 802 IPR016652 GO:0004843|GO:0016579
Amo02g2581 866 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 250 IPR013083 -
Amo02g2581 866 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 620 661 IPR015940 -
Amo02g2581 866 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 305 803 IPR028889 -
Amo02g2581 866 SUPERFAMILY UBA-like 674 720 IPR009060 GO:0005515
Amo02g2581 866 SUPERFAMILY RING/U-box 154 263 - -
Amo02g2581 866 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 306 321 IPR018200 GO:0004843|GO:0006511
Amo02g2581 866 CDD UBA1_atUBP14 622 666 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g2581 Amo-Chr2 81818579 81824610 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g2581 619 684 C2H2 Transcription Factor Family AT1G04850 34.848 7.66e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g2581 K11836 - gmx:100805602 1305.04