Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g2549 ATGGATTTCAATGGGATGTTTGGAGCCGAAATGGAACTGTCAGATGAGAACAGCTCGGATGGATATTGTGGCCATTATTATGCGAGTGACGATGAAGGTGAGGAGGACGAAGGTGGTCAGGACTTCGGTGGTGAGGAAGGTGACCCAACAGGGGATGGTGGGAAAAATTGGCCGGTTGTGGCAGAGGATTTCCTAGGCATGGAGTTTGTTGGCGAGCAGGATGCCTACCTTGCGTACAAGGAGTTTGCTAGAACAAGGGGCTTTGGGGTCCGCAAGGGAGATGTGGGGCGTGTTGATGGGGTTTTGGTCAGGAGAGACTTTTTCTGCCACTGCCAAGGCACAAGACATCATAAGCACTATGATCGTCCTGAGCGAGTTAGGGAGGAGAGATTGGAGAGTCAAACTGACTGCAAGGCGAAGTTGAAGATTTACTATGATGTGCAACGCAGTGTGTGGAAGGTCAGGACTATCTTCGATAAGCACAACCACGAGCTTGCTTCGGCCATGTTTTCCCACCTCTTGCCTAGTCATCGCAAGATGAGTAACGGTGACAAAGCGCAAGTTGATAGCATGAAGAAGTTTGGGATACCAACCTCGAAGATAATGGCTTATATGGCTGGTCAATCTGGAGGGACAACCTCCAAGTGTGAGGGAATTAATGCATACATAAAGGGGTTCCTGAAATCCACTGATAGCATGTTGGAGCTGGTGCACAGCTTAGATCGCGTTGTAAAGGATTATCGAAACAATGAAGTCACGGCACAGTTCTATTCTACGTATTATAGCCCCGTGTTAACAACCGGGCTTGACTCCATTGAGCTTTTTGCATCAAAACTGTACACGCAGGCAGTTTTTAGAGAGGTGAAGAAACAAATCAAGGGTGTTGCGACCTTGCTGTTTCGTTGGAGAGATAGCATCAGCACAACGGTTGTCTACAAGTTTTCAAGGATGGGCGCCCCTGGTAGGATTCACAAGGTTTTGTTCAACCCCGATGACAAGAAAATTCAGTGCGACTGTTCGATGTGGAATAGCGAGGGTATTCCATGTAGTCACATATTCTGCGTGATGAAATACGAGGGTTTGGAACAAATACCAGACAGTCTTATATTGAGAAGATGGTGCAAGGATGCAAAAGATTCTAGCCGGATGCCGGTGATTACGAGACCTGGACACGAGGGTCGCATGCTTAGGACCCGGTTGTTGCAAGAACAAAAGGTGCCCCTAAGAGGAAGAAAGATTTTGACCCAGGCAGTCAACCAGATTTCCGAGAGAAGAGACGTTGCTGCACCAAATGTGGCATCCCAGGACATACAAAGAGGACATGCAGCGGGGACTGTGCACGAGGATCAAACCTTGACTCAAGGCGAAGGTGGTCTCAATAACGTGTCTAGCGCAGCGATGAATACATCCTCCATGGTGAATCGGAGCGGTAGTCCATCTTGGCGTCCTCCATTCTGTGGCGYGYGAAGTGGYGGGACCTTCTTCCTTGGGGGCCAACARATCCACCAATTCTATGCATCCCAACCTTGCTRTGGGCACCAAAGRGAACCACCGCCGCACGAAGGCCACTGCAGTATGTCGKCTCCGACAAGGGCAACGAATGAAGACTTGTTTGAACGGTGGCTGCTCCAGTGTGTTGGTGGTCACTCTCTTAGTGCTGCTAGCGAACACGCAGCGTTAGAGATTTCTCCACTGTACTATGAGGAGCCGGATGATGATAACTTATTACCAAGCTCATGGAGAGGTGCAGGGCTAGTTGCAGTAAGTTGCTTCGTAMATATAGATTCTCAAGGTGAAGGACAGATGCAGGACCACTTGATGTAA 1824 0.4885 MDFNGMFGAEMELSDENSSDGYCGHYYASDDEGEEDEGGQDFGGEEGDPTGDGGKNWPVVAEDFLGMEFVGEQDAYLAYKEFARTRGFGVRKGDVGRVDGVLVRRDFFCHCQGTRHHKHYDRPERVREERLESQTDCKAKLKIYYDVQRSVWKVRTIFDKHNHELASAMFSHLLPSHRKMSNGDKAQVDSMKKFGIPTSKIMAYMAGQSGGTTSKCEGINAYIKGFLKSTDSMLELVHSLDRVVKDYRNNEVTAQFYSTYYSPVLTTGLDSIELFASKLYTQAVFREVKKQIKGVATLLFRWRDSISTTVVYKFSRMGAPGRIHKVLFNPDDKKIQCDCSMWNSEGIPCSHIFCVMKYEGLEQIPDSLILRRWCKDAKDSSRMPVITRPGHEGRMLRTRLLQEQKVPLRGRKILTQAVNQISERRDVAAPNVASQDIQRGHAAGTVHEDQTLTQGEGGLNNVSSAAMNTSSMVNRSGSPSWRPPFCGXXSGGTFFLGGQQIHQFYASQPCXGHQREPPPHEGHCSMSXPTRATNEDLFERWLLQCVGGHSLSAASEHAALEISPLYYEEPDDDNLLPSSWRGAGLVAVSCFVXIDSQGEGQMQDHLM* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g2549 607 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 211 383 - -
Amo02g2549 607 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 61 187 - -
Amo02g2549 607 MobiDBLite consensus disorder prediction 509 528 - -
Amo02g2549 607 SMART 26again6 335 362 IPR006564 GO:0008270
Amo02g2549 607 MobiDBLite consensus disorder prediction 1 57 - -
Amo02g2549 607 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 211 383 IPR031052 GO:0006355
Amo02g2549 607 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 61 187 IPR031052 GO:0006355
Amo02g2549 607 Pfam FAR1 DNA-binding domain 79 166 IPR004330 -
Amo02g2549 607 ProSiteProfiles Zinc finger SWIM-type profile. 324 360 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g2549 Amo-Chr2 80013838 80017675 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo02g2549 FAR1 5.7e-15 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g2549 - - ahf:112709549 359.377