Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g2504 ATGGGAAAGTCTTTCAAGGATTCACTCAAAGCACTTGAAGCTGACATACACTTTGCAAATACTCTAGCTTCTGATTATCCGAGAGAATATGATGGCGCCACCTTACAAATGAGATTGTCTTTTAGCCCCGCTGCCCAGTTTTTCCTTTTCTTAGTCCAGTGGACCGATTGTCAGCTCGCCGGGGCTTTAGGATTGCTAAGAATTCTCATATACAAGACATATGAAGATGGAAAGACAACCATGTCCATTTATGAAAGAAAAGCCAGTTTGAAGGAGTTCTATGGGGTGATATTTCCTTCTTTATTACAACTTCAGAGAGGAATCACTGATTTAGAAGACAGGAAACAAAAAGATATATGCGCCACGAAGTATAGGCTGAGAGATTCGGCAGGAAAAGGAAAATTATCTGAGATTGATATCGAGAGAGAGGAAGAATGTGGTATTTGCTTGGAAGTAAACAGCATGGTTGTGTTGCCGAATTGCTACCATTCGATGTGTATGAAATGCTACCGAGACTGGCACGCGCGATCGCAGTCTTGCCCTTTCTGCCGGGATAGCCTTAAAAGAGTGAACTCCGGCGACCTTTGGATATATATGAGCAACAAGGAAATAGATGACTTGGCTTCAATCAACAAGGAGAACTTAAAGAGGCTGTTTATGTACATTGATAAGTTACCTCTAGTTGTGCCAGCTCCTATGTTCATGACTTATCCTCCACATCGTTTCTGA 729 0.4198 MGKSFKDSLKALEADIHFANTLASDYPREYDGATLQMRLSFSPAAQFFLFLVQWTDCQLAGALGLLRILIYKTYEDGKTTMSIYERKASLKEFYGVIFPSLLQLQRGITDLEDRKQKDICATKYRLRDSAGKGKLSEIDIEREEECGICLEVNSMVVLPNCYHSMCMKCYRDWHARSQSCPFCRDSLKRVNSGDLWIYMSNKEIDDLASINKENLKRLFMYIDKLPLVVPAPMFMTYPPHRF* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g2504 242 ProSitePatterns Zinc finger RING-type signature. 161 170 IPR017907 -
Amo02g2504 242 Pfam Zinc finger, C3HC4 type (RING finger) 143 189 - -
Amo02g2504 242 PANTHER RING FINGER PROTEIN 41, 151 1 240 - -
Amo02g2504 242 ProSiteProfiles Zinc finger RING-type profile. 146 184 IPR001841 -
Amo02g2504 242 PANTHER E3 UBIQUITIN-PROTEIN LIGASE AIRP2 1 240 - -
Amo02g2504 242 SUPERFAMILY RING/U-box 135 189 - -
Amo02g2504 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 193 IPR013083 -
Amo02g2504 242 SMART ring_2 146 183 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g2504 Amo-Chr2 78710474 78713753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g2504 90 188 C3H Transcription Factor Family AT5G01960 28.846 2.97e-06 45.8