Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g2471 ATGCCTCGCCGTAGTCCTCCGTCCTCATCATCGCCGCCGAGGCCAACACCTATTCCGGCCAAATTCTGGCGTGCATGTGCTGGAATCTCTGCGCACGCACCAGTAGTGAACTCTAGGGTTTACTACTTTCCACAGGGACACATCGACCAAGCTGCTTCGCAACCGCTTAACCTTTCACCTCTAGTTTACTCCAGGCCGGTCATCCCTTGCCGTGTCGCCGCCGTCAACTTTTTCGCGGACCCTAACACCGACGAGGTCTTCCTCAAGATTCTTCTCCTTCCTGTCACCGATGGATCCGCTCAGGATTTTCTTTCACCTGCCGTCGCCGCCGAAGGCAGCGGCAACGGCAATGGCGACGATGAAAAGGTTGAGTCGTACGCCAAGATTCTCACGCGGTCCGATGCGAACAATGGCGGAGGGTTTTCGGTGCCGAGATTCTGTGCGGACTTGATCTTCCCGCCGTTGAACTTTGAAGAGGACCCGCCGGTGCAGACGCTTCGCATAACCGACCTCCACGGCGCCGTTTGGGAGTTTCGCCACATCTACCGAGGGACGCCGAGACGGCACCTCTTCACTTCTGGCTGGAGCAAGTTCGTTAACAGCAAGAAGATTATCTCTGGCGATACTGTGGTCTTCATGAAGGACTCCGATGGCAGGATGTTTGTCGGAATCCGTCGCAATATGTCACCGGACGACGGTATCTCAGACGGCGGATTGGATTGGTTACAAGATGGGAGGGTGAGTTCGGCTTCAGTGGCGGAGGCGATGGAGCTGGCGGCCCAGAACAAGCCGTTCGAAGTTGTTTACTATCCAAGCGTGGGTTGGGGGGAGTTTGTGGTAAAGGCAGAGGATGTAGACGTGAAGATGAATGGTATTCTCTGCAGTGTTGGGATGAGAGTGAAGATGGCTAGAGAGAACTACGATTCTTCACGGATGACTTGGTTTCAGGGAACAGTTTCTGGTGTTACTATTCCCGGTGAAGCTCAACCATGGAGCGGTTCTCCTTGGCGCATGCTTCAGATTACATGGGATGAATCTGAAATCTTGAAGAATGTAAGTCCCGTTAGTCCATGGCAGGTGGAGTTTCTTTCTGACACACCTTCACTTCCTCAAGTATTTCCCCCGACAAAAAAATTCAGAATTGCAGACGGTTCTTCTAAAATTTTCAGTCATGAAGTGGAAGAATCCTCCTTTTCCATGACAAGACTTGCTATTCCTGATTTAGCAATGGGAGTGCTGAATCAAACATTGTTGATGAGTAGTTATGGCACCCCTTTTCCTGCTAGCATTCAGGGAGCCAGGCATCCTCTACTTTCTGCACCTACTTGTCCCATTTTTCCGATTAATCCTCCTCTGTCTATTGCTAACTCCTTTGAGAATAACATTAGACCAAGCAACTCAACCAAATCTGGGACTGCTTCTTTTCAGCTATTTGGTTGTACTATTCAAACAGATCAAGCTTCTGATGAAATTGATGACCATAGCACCGCTAAAAATGACGCAGGAGAAGACAACGTATAA 1521 0.503 MPRRSPPSSSSPPRPTPIPAKFWRACAGISAHAPVVNSRVYYFPQGHIDQAASQPLNLSPLVYSRPVIPCRVAAVNFFADPNTDEVFLKILLLPVTDGSAQDFLSPAVAAEGSGNGNGDDEKVESYAKILTRSDANNGGGFSVPRFCADLIFPPLNFEEDPPVQTLRITDLHGAVWEFRHIYRGTPRRHLFTSGWSKFVNSKKIISGDTVVFMKDSDGRMFVGIRRNMSPDDGISDGGLDWLQDGRVSSASVAEAMELAAQNKPFEVVYYPSVGWGEFVVKAEDVDVKMNGILCSVGMRVKMARENYDSSRMTWFQGTVSGVTIPGEAQPWSGSPWRMLQITWDESEILKNVSPVSPWQVEFLSDTPSLPQVFPPTKKFRIADGSSKIFSHEVEESSFSMTRLAIPDLAMGVLNQTLLMSSYGTPFPASIQGARHPLLSAPTCPIFPINPPLSIANSFENNIRPSNSTKSGTASFQLFGCTIQTDQASDEIDDHSTAKNDAGEDNV* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g2471 506 MobiDBLite consensus disorder prediction 487 506 - -
Amo02g2471 506 CDD B3_DNA 125 226 IPR003340 GO:0003677
Amo02g2471 506 SUPERFAMILY DNA-binding pseudobarrel domain 122 231 IPR015300 -
Amo02g2471 506 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 229 IPR044835 GO:0003677|GO:0006355|GO:0009725
Amo02g2471 506 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 245 464 IPR044835 GO:0003677|GO:0006355|GO:0009725
Amo02g2471 506 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Amo02g2471 506 PANTHER AUXIN RESPONSE FACTOR 245 464 - -
Amo02g2471 506 Pfam Auxin response factor 255 340 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Amo02g2471 506 Gene3D - 123 228 IPR015300 -
Amo02g2471 506 Pfam B3 DNA binding domain 127 227 IPR003340 GO:0003677
Amo02g2471 506 MobiDBLite consensus disorder prediction 486 506 - -
Amo02g2471 506 Gene3D - 294 367 - -
Amo02g2471 506 PANTHER AUXIN RESPONSE FACTOR 12 229 - -
Amo02g2471 506 SMART B3_2 126 228 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g2471 Amo-Chr2 78223045 78225790 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g2471 22 435 B3 DNA Binding Superfamily AT1G77850 47.846 1.91e-129 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Amo02g2471 B3 6.1e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g2471 - - adu:107475253 983.015