Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g2469 ATGGAGGGAAAAGATGAAGATGTGAGAGTTGGAGCAAATAGGTATAGAGAGAGACAAGCAATAGGAACAGCAGCACAAGCAGAACAAGATGGGAAGGACTATAAGGAACCACCATCAGCACCATTGTTTGAGGCTGGTGAATTGTCATCTTGGTCCTTCTACAGGGCATGCATAGCTGAGTTTGTGGCCACGTTTTTGTTTCTCTACATCACAGTGTTGACGGTTATGGGTGTGGCTAAATCCAGTAGCAAGTGTAACACTGTTGGTGTTCAAGGGATTGCTTGGGCTTTTGGTGGCATGATCTTTGCTCTTGTCTATTGTACTGCTGGAATCTCAGGGGGTCACATAAACCCAGCAGTGACATTTGGTCTGTTCTTGGCGCGAAAGCTGTCACTAACAAGAGCAGTGTTCTACATAATGTTTCAGTGTTTGGGGGCCATTTGTGGTGCTCTGGTTGTAAAGGGGTTCCAGCCACACCAATTTGAAAGGCTTGGTGGCGCTGCCAACTCTGTTAGCAGAACCTACTCCAAAGGTGGTGGCCTTGGTGCTGAGATTGTTGGCACTTTTGTTCTTGTTTACACTGTTTTCTCTGCCACTGATGCCAAAAGAAATGCCAGAGACTCCCATGTTCCCATTTTGGCACCATTGCCTATTGGTTTTGCTGTATTTTTGGTGCATTTGGCTACAATTCCTGTCACTGGAACTGGCATCAATCCAGCTAGAAGTCTTGGTGCAGCCCTTGTTTATAACAAGGACCAAGCTTGGGATGACCATTGGATCTTCTGGGTAGGCCCCTTCATTGGGGCAGCACTTGCAGCTTTGTACCATCAAATTGTGATCAGGGCCATTCCCTTCAAGTCAAAGTAA 867 0.4648 MEGKDEDVRVGANRYRERQAIGTAAQAEQDGKDYKEPPSAPLFEAGELSSWSFYRACIAEFVATFLFLYITVLTVMGVAKSSSKCNTVGVQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIMFQCLGAICGALVVKGFQPHQFERLGGAANSVSRTYSKGGGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPVTGTGINPARSLGAALVYNKDQAWDDHWIFWVGPFIGAALAALYHQIVIRAIPFKSK* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g2469 288 PANTHER AQUAPORIN PIP 1-3 1 288 - -
Amo02g2469 288 Pfam Major intrinsic protein 47 276 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo02g2469 288 CDD MIP 55 279 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo02g2469 288 ProSitePatterns MIP family signature. 115 123 IPR022357 -
Amo02g2469 288 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo02g2469 288 PRINTS Major intrinsic protein family signature 97 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo02g2469 288 PRINTS Major intrinsic protein family signature 134 153 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo02g2469 288 PRINTS Major intrinsic protein family signature 183 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo02g2469 288 PRINTS Major intrinsic protein family signature 219 241 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo02g2469 288 PRINTS Major intrinsic protein family signature 259 279 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo02g2469 288 Gene3D Glycerol uptake facilitator protein. 40 287 IPR023271 -
Amo02g2469 288 SUPERFAMILY Aquaporin-like 48 281 IPR023271 -
Amo02g2469 288 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 288 IPR034294 -
Amo02g2469 288 TIGRFAM MIP: MIP family channel proteins 59 276 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g2469 Amo-Chr2 78197252 78200482 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g2469 1 288 Major Intrinsic Protein MIP AT3G61430 82.292 1.83e-172 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g2469 K09872 - qsu:111983155 518.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2233 12 102032170 102035730 Amo02g2469 02 78197252 78200482 hybridization