Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g2449 ATGTATGCAACTATTGGCTATAGCTTATTAGAAGAAGAAGAAGAAGAAATGAACAGGGGAATTGAAGTTCTGTCTCCAGCTTCTTACCTTCACAACTCAAATTGGTTGTTCCAAGAGAGTGCAGGAACCAAATGGACACCACAAGAGAACAAGCAATTTGAGAACGCTTTGGCGCTCTTCGACAAGGAGACGCCGGACCGGTGGCTGAAGGTGGCGGCTATGATCCCGGGGAAGACGGTTGGTGATGTGATCAAACAGTATAGGGAGTTAGTTGAAGATGTGAATGTAATTGAATCTGGGTTCATACCAATTCCAGGGGGAACTACTGATGGTTCTTTCACATTGGAGTGGGTTGATAATCATGAATTTGATGGGTTTAAGCAATTCTATGGTGTTGGTTGCAAAAGGGGTTCTTCCACTAGGCCTTCTGAACAAGAAAGGAAGAAAGGTGTACCATGGACTGAAGAAGAGCACAGGCTATTTTTGATGGGTTTGAAGAAGTATGGTAAAGGTGATTGGAGAAATATATCTCGAAATTTTGTTACAACAAGGACGCCGACGCAAGTTGCAAGTCATGCTCAGAAATACTTTATCCGGCAACTTAACGGCGGCAAGGATAAGCGGAGATCCAGTATCCATGATATCACAATGGTTAATCTCCCTGAAACAAAGTCMCCTTCGTCGGAAAGTAACAAACCTCCTTCTCCAGATGCYAATTTGAATCAGAATCAGAAGCTTTTGTCAAGCATGGTTAAACAGGAATATGACTGGAAATCACCACCATATGAYGGTGTGCCTTTGWTGTTTGATTCAACAAATGGAAATTCGTTCATGACACCTTTGTGTGGAGCTTCTTCATACGGATCTAAACCTCAGGAGCAGTATTTACTCAGAGGAACTTTCCATGGATTTCAATTTGGACCTTATGATACTTTTATGCAAATGCAACCTCAGTGA 957 0.4211 MYATIGYSLLEEEEEEMNRGIEVLSPASYLHNSNWLFQESAGTKWTPQENKQFENALALFDKETPDRWLKVAAMIPGKTVGDVIKQYRELVEDVNVIESGFIPIPGGTTDGSFTLEWVDNHEFDGFKQFYGVGCKRGSSTRPSEQERKKGVPWTEEEHRLFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLNGGKDKRRSSIHDITMVNLPETKSPSSESNKPPSPDANLNQNQKLLSSMVKQEYDWKSPPYDGVPLXFDSTNGNSFMTPLCGASSYGSKPQEQYLLRGTFHGFQFGPYDTFMQMQPQ* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g2449 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 145 201 IPR017930 -
Amo02g2449 318 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 148 200 IPR006447 GO:0003677
Amo02g2449 318 SMART sant 41 93 IPR001005 -
Amo02g2449 318 SMART sant 149 199 IPR001005 -
Amo02g2449 318 Gene3D - 37 104 - -
Amo02g2449 318 SUPERFAMILY Homeodomain-like 43 99 IPR009057 -
Amo02g2449 318 Pfam Myb-like DNA-binding domain 44 90 IPR001005 -
Amo02g2449 318 Pfam Myb-like DNA-binding domain 152 197 IPR001005 -
Amo02g2449 318 MobiDBLite consensus disorder prediction 208 245 - -
Amo02g2449 318 ProSiteProfiles SANT domain profile. 153 201 IPR017884 -
Amo02g2449 318 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 17 245 IPR043363 -
Amo02g2449 318 Gene3D - 151 201 - -
Amo02g2449 318 MobiDBLite consensus disorder prediction 216 245 - -
Amo02g2449 318 ProSiteProfiles SANT domain profile. 40 95 IPR017884 -
Amo02g2449 318 SUPERFAMILY Homeodomain-like 146 200 IPR009057 -
Amo02g2449 318 ProSiteProfiles Myb-like domain profile. 145 197 IPR001005 -
Amo02g2449 318 CDD SANT 152 197 IPR001005 -
Amo02g2449 318 PANTHER TRANSCRIPTION FACTOR DIVARICATA 17 245 - -
Amo02g2449 318 CDD SANT 44 91 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g2449 Amo-Chr2 77730612 77733700 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo02g2449 Myb_DNA-binding 2.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g2449 - - gmx:778077 463.381