LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo02g2441	ATGTCTGCTTCTGCCGAGTCCACAAGATGGATCTACGATGTGTTCTTGAGCTTCAGGGGCAACGATGCTCGCAACCCATTCATCTTTCATCTCTACAACGCTCTCACCCAAGCCGCGATTCACGTCTTCAGGGACGACGAGGAGCTCCAGAGAGGAGACGAGATCTCCACCTCGCTGACTCGAGCCATCGAAGCTTCTAGAATCTCTCTTGTTGTCTTGTCACAAAACTTTGCGGCTTCCAAATGGTGCTTGGAGAAAATAATGGAGTGCCATAGAACCATAGGCCAGAGGGCTATTCCGGTGTTCTATGATGTAGATCCAGCGGAGTTGCGCCATCAGAGAGGCACCATTGGAAGTGATTTGCAGTATCACATGGAAAGGTTCTCAGAGGAAAAGGTCAACGTCTGGAGGTCGGCGCTCCGGGACGTTGCTAACCTTTCAGGATTCGATTTGCAAAATTCCAGGAATCAAGCTGAGGATATCAATAGGATTGTAGAAAGTATCACTGCTTTGCTAGACAATACAATCTTGTTTGTTGCTCAACATCCTGTTGGAGTAGAGTCTCGTGTACAACATGTGATCAATCTGTTAAACTCCAACAGATCCGATAATGTTTTGATATTAGGAATATTGGGAATTGGGGGAATCGGAAAAACAACTATTGCCAAAGCCATTTACAATCAAGTTCATGGTTGTTTTGAGGGTTATTGCTTCCTTCCAAATATAAGAGAATTTTGGATGCAGAGTACTAGCCAAGTTCATTTGCAAGAACAGCTTCTTTCAAACATCTTCAAAACTACAAAGATAAGGATACATAACATCGACTCTGGAAAAATTATATTACAACAAAGACTTTGTGGCAAAAAGTTGTTTCTTATACTTGATGATGTTGATGAATTAGACCAACTAAATGCATTGTGTGGAAGTCGAGAATGGTTTGGTCCAGGTAGTAGAATAATCATCACAACAAGAAATGAACATCTTCTTAAAGTTCTTCAAGTTGATCACATTTCTAGGATGTCAAATATGGACCATCATGAATCTATTGAGCATTTTAGTTGGCATGCATTTAAACAAAAATGTCCCAAGAGAGAATTTCTTGAACTTTCTAAGAAGGTAGTTGCATATTGTGGGGGATTGCCACTAGCTCATGAGGTTATTGGGTCTTTGTTGTTTGATAGGATGAAAAAAGTGTGGGAAAGTGTATTGGAGAAACTCACAAGAATTCCTAACCATGAAGTGCAAAAGAAGCTAAGAATAAGTTTTGATAGTTTAGTTGATGATACAATCAAAGAAATTTTCCTTGACATAGCATTTTTCTTTATTGGGATGAATCGAAATGATGTGATACACATTTTAGATGAATATAATGCTGAAATTGGAATAGACGTCCTTATAGATCGAAGTCTTGTGACTGTTGACAACAATAACAAGCTTGGAATGCATGATTTGCTGCGAGATATGGGAAGAGAAATTGTTCGTGAGAAATATCCAAAAGAGCCAGAAAAGCGTAGCAGGTTATGGTTACAAAAGGAAGTGATTGAAGTGCTACAAACACATATTTTGACAAGAACCAATACAATTTGTTTGGAGGCTAAAGCATTTAAGGAGATGAAAAAACTCAGATTGCTTCAACTTGTTGGTGTACTTGGCAGAGATTTTGAATATATCTCAAGAGATTTGAGATGGCTTTATTGGCATGGATTTCCTTTAAAATACATACCACCAAACTTTTCTCAGGAAATGTATCATTCCCAAAACCTGAGACAAACCCCAAACTTTTCATACTTGCCAAATCTTGAAAAGCTGCTACTCAAAGATTGTTCAAGCTTATCTACAATTTCAGACACAATAGGACATCTGAAAAAGATTCTTGTAATAAATTTAGAAGACTGCATTAGCCTTGGCAACCTGCCAAGAAGCTTTTATAAGTTGAAATCTCTGACCACTCTCATCATTTCCGGATGCTCAATGATTGACAAATTGGAAGAGGACTTGGAACAAATGGAGTCATTAATTACTTTAATTGCAGATAAGACTGCAATAACACAAGTGCCATTTTCAATAGTAAGATCAAAAAGCATTGGATATGTTTCTTTGTGTGGTTATGAAGGATTCTCACGTGATGTGTTTCCCTCTCTCATTTGGTCATGGATGTCACCAACAAATAATCTTTCATCTCTAGTTTCTGCCCCAGAACTTGTTTCCTTCTTAGATTTACCAAAGCTTCAATATCTTCAAGTAGAGTGCAACTCAGATCTTCAATTAGCTGAAGGTGTAACAAAAATTTTGGAAATATTGTATGCCACATACTACAATGAATTAGAAGCAATTCCAACAACATCACAAGTCTTGAATATTGAAACTTCAACAATAATTGATTTTCGCAGTGAATTTCAAATTAATGGATTAGTGAAGTCTCTTTTAATTGAAGTGGGAGCGAAGAGCCAAGTCAGTGGTATTCTTAAGGAAAGAATCTTACAGAAATTAAATACGAATGACCATGATCGTCAATCAGTGCTGCCCGGTGACAATTATCCTGATTGGTTGAGCTTCAATAGCGAAGGTTCATCCATACACTTTAAAGTTCCTCACATCAACGGGCGTGACTTGAAGACAATGATGTTATGCGTTGTTTATTCTTCTTCCCAAGACACAATCTCATCAAGATGTCTTCAAAATGTGTTAATCATAAATTACACAAAGTATACCATTCAGGTCTATAAACGTGACACATTAGCCTCTCTTCAAAATGAGGACTGGCAATGCATAATTTCAACTTTGGAACCTGGAAACATTGTGGAGGTTCTTGTTCTTGTTTATGGCTTTGAATTTGTTGTGAAGAACACAACAATTTATCTCATATATAGTGAATCAACTAATGAGGAAATTGAGCATAGCAACAAAACAGGAGATAAGGATTCAAGTTATGTGCCAGAAGTTAAGAATGTTATTGCTTCGACTAATGCTAAATCTAGATTGTGTGGATCCTTGACTCTTGCTTCCTTTCTGATCTGGAAACGTGGGCGATCTGGCAAACGAAGATAA	3048	0.378	MSASAESTRWIYDVFLSFRGNDARNPFIFHLYNALTQAAIHVFRDDEELQRGDEISTSLTRAIEASRISLVVLSQNFAASKWCLEKIMECHRTIGQRAIPVFYDVDPAELRHQRGTIGSDLQYHMERFSEEKVNVWRSALRDVANLSGFDLQNSRNQAEDINRIVESITALLDNTILFVAQHPVGVESRVQHVINLLNSNRSDNVLILGILGIGGIGKTTIAKAIYNQVHGCFEGYCFLPNIREFWMQSTSQVHLQEQLLSNIFKTTKIRIHNIDSGKIILQQRLCGKKLFLILDDVDELDQLNALCGSREWFGPGSRIIITTRNEHLLKVLQVDHISRMSNMDHHESIEHFSWHAFKQKCPKREFLELSKKVVAYCGGLPLAHEVIGSLLFDRMKKVWESVLEKLTRIPNHEVQKKLRISFDSLVDDTIKEIFLDIAFFFIGMNRNDVIHILDEYNAEIGIDVLIDRSLVTVDNNNKLGMHDLLRDMGREIVREKYPKEPEKRSRLWLQKEVIEVLQTHILTRTNTICLEAKAFKEMKKLRLLQLVGVLGRDFEYISRDLRWLYWHGFPLKYIPPNFSQEMYHSQNLRQTPNFSYLPNLEKLLLKDCSSLSTISDTIGHLKKILVINLEDCISLGNLPRSFYKLKSLTTLIISGCSMIDKLEEDLEQMESLITLIADKTAITQVPFSIVRSKSIGYVSLCGYEGFSRDVFPSLIWSWMSPTNNLSSLVSAPELVSFLDLPKLQYLQVECNSDLQLAEGVTKILEILYATYYNELEAIPTTSQVLNIETSTIIDFRSEFQINGLVKSLLIEVGAKSQVSGILKERILQKLNTNDHDRQSVLPGDNYPDWLSFNSEGSSIHFKVPHINGRDLKTMMLCVVYSSSQDTISSRCLQNVLIINYTKYTIQVYKRDTLASLQNEDWQCIISTLEPGNIVEVLVLVYGFEFVVKNTTIYLIYSESTNEEIEHSNKTGDKDSSYVPEVKNVIASTNAKSRLCGSLTLASFLIWKRGRSGKRR*	1016

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo02g2441	1015	Gene3D	-	152	337	IPR027417	-
	Amo02g2441	1015	SUPERFAMILY	Toll/Interleukin receptor TIR domain	3	149	IPR035897	-
	Amo02g2441	1015	Gene3D	-	1	144	IPR035897	-
	Amo02g2441	1015	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	22	953	IPR044974	GO:0006952
	Amo02g2441	1015	ProSiteProfiles	TIR domain profile.	10	172	IPR000157	GO:0007165
	Amo02g2441	1015	Gene3D	Ribonuclease Inhibitor	503	798	IPR032675	-
	Amo02g2441	1015	PANTHER	RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED	22	953	-	-
	Amo02g2441	1015	PRINTS	Disease resistance protein signature	595	611	-	-
	Amo02g2441	1015	PRINTS	Disease resistance protein signature	284	298	-	-
	Amo02g2441	1015	PRINTS	Disease resistance protein signature	377	391	-	-
	Amo02g2441	1015	PRINTS	Disease resistance protein signature	207	222	-	-
	Amo02g2441	1015	SUPERFAMILY	"Winged helix" DNA-binding domain	413	518	IPR036390	-
	Amo02g2441	1015	SMART	till_3	11	146	IPR000157	GO:0007165
	Amo02g2441	1015	Pfam	NB-ARC domain	187	420	IPR002182	GO:0043531
	Amo02g2441	1015	Pfam	TIR domain	12	168	IPR000157	GO:0007165
	Amo02g2441	1015	Coils	Coil	659	679	-	-
	Amo02g2441	1015	SUPERFAMILY	L domain-like	515	793	-	-
	Amo02g2441	1015	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	171	437	IPR027417	-
	Amo02g2441	1015	Gene3D	-	342	426	IPR042197	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo02g2441	Amo-Chr2	77534227	77549979	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo02g2441	12	689	WRKY Transcription Factor Family	AT4G12020	26.747	4.55e-55	207

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo02g2441	-		-	ahf:112727938	1424.07