Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g2440 ATGAATCTCTTGAATTTTTTTTGTTGGAATGCATTTGGGAAAGCAACTCCTTTAACCGAGTTTGTTAGACTTGCAGAAGATGTAGTTGCATATTGTGGGGGATTGCCACTAGCCCTTGAAACAGTTGGTTGTCAGTTATTTGGAAAGATGAAAGACGAGTGGGAGAATGTATTAGGTGGACTCAAAAGGTTTCCCCATCCGGATGTACACCAAGTTTTGAAAATAAGCTTTGGTGGCTTAAATGATGACAGAGAGAAAGAAATATTTCTTGACATAGCTAGCTTTTGTATTGGCATGGAAAGGGGGGAGGTACTGGAAACACTAAATTATGGCTTTGGAATTAGTTTCCTTGAAGAGCGGAGTCTTATAACATTTGATGAGAAAGATAGAGTTCGAATGCATCCTTTGCTGCGAGACATGGGAAGAGAAATCGTTCGAGAGCAATCACAAACTGATGATCAGCGAAGGACGTACGATGTTTTCGTGAGTTTTCGAGGCAAGGACACTCGTCCAACGTTTACATCACATCTCCATACATCTCTCCAAAATGCTGGAATTGCTGCTTTCAAGGATGACGATGATGTTGATGGACTTCAAAGGGGAGAACGGATTTCAATCGCATTGTTAAAAGCAATTGGATTGTCTGCATGTTCTGTCATTGTTTTTTCAACCCACTATGCTGATTCAAAAATGGTGCCTGCAAGAGCTTGA 711 0.4079 MNLLNFFCWNAFGKATPLTEFVRLAEDVVAYCGGLPLALETVGCQLFGKMKDEWENVLGGLKRFPHPDVHQVLKISFGGLNDDREKEIFLDIASFCIGMERGEVLETLNYGFGISFLEERSLITFDEKDRVRMHPLLRDMGREIVREQSQTDDQRRTYDVFVSFRGKDTRPTFTSHLHTSLQNAGIAAFKDDDDVDGLQRGERISIALLKAIGLSACSVIVFSTHYADSKMVPARA* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g2440 236 Gene3D - 2 81 IPR042197 -
Amo02g2440 236 ProSiteProfiles TIR domain profile. 156 236 IPR000157 GO:0007165
Amo02g2440 236 SUPERFAMILY "Winged helix" DNA-binding domain 68 150 IPR036390 -
Amo02g2440 236 Pfam TIR domain 158 230 IPR000157 GO:0007165
Amo02g2440 236 SUPERFAMILY Toll/Interleukin receptor TIR domain 150 231 IPR035897 -
Amo02g2440 236 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 92 IPR027417 -
Amo02g2440 236 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 168 230 IPR044974 GO:0006952
Amo02g2440 236 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 4 152 IPR044974 GO:0006952
Amo02g2440 236 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 168 230 - -
Amo02g2440 236 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 4 152 - -
Amo02g2440 236 Gene3D - 155 233 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g2440 Amo-Chr2 77526719 77528893 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g2440 28 159 WRKY Transcription Factor Family AT5G45050 42.446 9.62e-18 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g2440 - - ahf:112727525 436.417