Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g2439 ATGGATCATTCAACCTCAGATTGTCAGCTGAATCCAGGCGAAGTGGATTATGAATTTGAATCTAACGAAGTTCCTGAGCCTCTCTCGGTTGTTGATGACGAGCTTGTTCCGAAGGTCGGAATGACCTTTACCACCCTTGAAGATGCTGGAAAATTTTACAGGAACTACGCCAAGGCTGCAGGTTTCTCTACAAGAGTTCGGTGCACAAATAGGAAGGGAAACGAGATTAAGAATCAACTGATTACATGTAGCAGAGAGGGAAAATGGAAATCTAAAATATCTCCGACCGAGAAGACCAATCCGACAGCCGGTTTAAACTGTCCTGCAAGAATTTATATACACACATTGAAGGATGTCGGTGCTTGGATCATTTCAAAGGTTGTGCTGGATCATTCACACCCCTGCTGTCCAAGCAAAGCAGAGATGCTCAAACAGCACAGGGAACTAAGCATGTCCATTCGTCGTACGATAGAGAATAACGAGGAGGCCGTCTGTGTTTGGGTGTATTATGCAGATCTGTACGAAGACCGTCACATATGGGTTCCTATCTATCTGGATCACCACTTCTGGGCAGGGATGAGAAGCACACAAAGGAGCGAGAGCATGCATTCATTTTTTAACAAGTACATCACCCGGAACAGCTCGCTTATTCAGTTCGTCAAACAATACGATAATTGCCTCGGAAGCAGGGAGCAAGCAGAGAGAGAATCAGATGCTGCAGATTTTCATACGGTCATACCGTGTGCAACCAAATCCTCCATTGAAGCTCAGTTTCAAGATGCGTACACTCATGCAAAGTTTAGGGAAGTCCAAGCGCAATTCAGAGGAAAGGCGAATTGCATCACCAGATTAAAGAATTCCGCTCTAGGCTATTCAGTATACGAAGTCGGAGAACAAGTTTCCAGCTCAATATTCAACAAGTTCGCGGTTACCTACGACTCAGTTGCAGCCGAGGTAAAATGCCAATGCTTATTATTCGAGTCGAGAGGGATACTGTGCCGTCACGCACTAAGCGTGTTAAGCTTCGAACAAGTAAGCCAAGTGTCCCCTAGATATATACTGGAACGATGGAGCAAGAAGGTAAAGAGGCGACACACACACATCAAGAGCAGCCACGACGAGCCACTAATGGAGCCAAGAAGCAAGAGGTTCGACCAATTGGTTTTTCGTTCGCAAAATATTTGCGAATTTGCCTCCGAATCGGAGGAGCTGACTGCAATTCTGCACCGTGCGTACGATAACGTCATGGCCGAGATGGAAGCATTAAAAGCCAAAAGGAAGGGGACATCTTCTTTATCCCACGAAGACGCCAACTTGGAATCCGTTAACGAGCTTCAAAGCCCGCCAAGGATTCGAACAAGAGGACGTCCAAAAAACAGGCTAGGTTCAAAGCTGGAGAAACAGATTGCAAATGCCACAAAGAAGAAGAAGACGAAAGTTTTAAGCGAGATAAACCTGTTTGATGCTGCATCAGCGGCGCATTCAAATTCCAGCCAATATCAAGGACACGTTATGAATTATCAGTTCAGGGTACCAGCAGCAGGGGATAACTCTTTGGGTGTATAG 1566 0.4566 MDHSTSDCQLNPGEVDYEFESNEVPEPLSVVDDELVPKVGMTFTTLEDAGKFYRNYAKAAGFSTRVRCTNRKGNEIKNQLITCSREGKWKSKISPTEKTNPTAGLNCPARIYIHTLKDVGAWIISKVVLDHSHPCCPSKAEMLKQHRELSMSIRRTIENNEEAVCVWVYYADLYEDRHIWVPIYLDHHFWAGMRSTQRSESMHSFFNKYITRNSSLIQFVKQYDNCLGSREQAERESDAADFHTVIPCATKSSIEAQFQDAYTHAKFREVQAQFRGKANCITRLKNSALGYSVYEVGEQVSSSIFNKFAVTYDSVAAEVKCQCLLFESRGILCRHALSVLSFEQVSQVSPRYILERWSKKVKRRHTHIKSSHDEPLMEPRSKRFDQLVFRSQNICEFASESEELTAILHRAYDNVMAEMEALKAKRKGTSSLSHEDANLESVNELQSPPRIRTRGRPKNRLGSKLEKQIANATKKKKTKVLSEINLFDAASAAHSNSSQYQGHVMNYQFRVPAAGDNSLGV* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g2439 521 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 172 416 IPR031052 GO:0006355
Amo02g2439 521 PANTHER OS03G0843700 PROTEIN 26 148 - -
Amo02g2439 521 PANTHER OS03G0843700 PROTEIN 172 416 - -
Amo02g2439 521 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 26 148 IPR031052 GO:0006355
Amo02g2439 521 SMART 26again6 319 346 IPR006564 GO:0008270
Amo02g2439 521 Pfam SWIM zinc finger 317 341 IPR007527 GO:0008270
Amo02g2439 521 ProSiteProfiles Zinc finger SWIM-type profile. 308 344 IPR007527 GO:0008270
Amo02g2439 521 MobiDBLite consensus disorder prediction 428 463 - -
Amo02g2439 521 MobiDBLite consensus disorder prediction 434 448 - -
Amo02g2439 521 Pfam FAR1 DNA-binding domain 51 136 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g2439 Amo-Chr2 77518519 77521572 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo02g2439 FAR1 1.7e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g2439 - - adu:110280503 656.751