Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo02g2355 | ATGTCAAGTATTCAAATGMCTCATGTGGATTTGGAACAAGGAAGAATCCTCCACCACCACCACCACCACCATAGCTCAGTGACTGGGAGTGACATTAGTCTATGCTTCTCTGATGCTGATGATGGAGGCTCATGCTACTCCCATTTCTACTCCACAAATGGTGGTGGATCCTACGATGAAGATTGCTGCTCCTATGGTGGAGCCTCAAATGTTGCAGATGGTGATGATGATGATTGTTCAGTTGAGATTGAAATTGAAAGTGGGGTACCTGAGATTAAGGTGCATTTGGCCACAAACAATAAAGTTGAGAGTAGGGATTGCAGGATTTGCCACCTTGGTTTGGAAGGTGATGATGGGAATAATGAATCTGGTGTTCCAATTGAATTGGGTTGTTCTTGTAAAGATGATCTTGCTGCTGCTCACAAGAATTGTGCAGAGGCTTGGTTCAAGATTAAGGGTAATAGGACCTGTGAAATTTGTCATACAATTGCACGGAATGTGTATTCAGCAAGTGAGGACACAACAGAGAGTGACATTAACAACAATAATATTAGTGTCACTGTTGGTTCAGCAGCATCCACAACAATCTCAGCACCTTCATCATCATCATCAGAAACTAGAAGATTTTGGCATGGCCATCGTTTCCTCAATTTTCTCCTTGCTTGTATGGTCTTTGCATTTGTCATATCATGGCTTTTTCACTTCAATGTTCCCTCTTCTTAA | 723 | 0.4191 | MSSIQMXHVDLEQGRILHHHHHHHSSVTGSDISLCFSDADDGGSCYSHFYSTNGGGSYDEDCCSYGGASNVADGDDDDCSVEIEIESGVPEIKVHLATNNKVESRDCRICHLGLEGDDGNNESGVPIELGCSCKDDLAAAHKNCAEAWFKIKGNRTCEICHTIARNVYSASEDTTESDINNNNISVTVGSAASTTISAPSSSSSETRRFWHGHRFLNFLLACMVFAFVISWLFHFNVPSS* | 241 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo02g2355 | 240 | SMART | ringv_2 | 106 | 161 | IPR011016 | GO:0008270 | |
| Amo02g2355 | 240 | CDD | RING_CH-C4HC3_MARCH | 107 | 161 | - | - | |
| Amo02g2355 | 240 | PANTHER | OS01G0850200 PROTEIN | 5 | 239 | - | - | |
| Amo02g2355 | 240 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 93 | 172 | IPR013083 | - | |
| Amo02g2355 | 240 | PANTHER | ZINC FINGER, RING-CH-TYPE | 5 | 239 | - | - | |
| Amo02g2355 | 240 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 99 | 167 | IPR011016 | GO:0008270 | |
| Amo02g2355 | 240 | SUPERFAMILY | RING/U-box | 101 | 164 | - | - | |
| Amo02g2355 | 240 | Pfam | RING-variant domain | 107 | 160 | IPR011016 | GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo02g2355 | Amo-Chr2 | 76074695 | 76079652 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo02g2355 | 79 | 240 | C3H Transcription Factor Family | AT5G05830 | 59.259 | 5.28e-61 | 189 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo02g2355 | - | - | gmx:100813946 | 301.982 |