Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g2308 ATGGACTATTATTCTCAAGATGGTGGGGAGTGGAATTCCTCTTATGTGAAGAAGTCCTCTCGTCCTGTCGGAACACTAGGACGCGTTTTAGATCACCTCAAAAACACCAAGGGATTTTCTCGTAATAGATTAAAATATTTGGTCCTAGATGAGGCGGACAGGCTGTTGAATGAGGACTTTGAGGAATCACTTAATGAGATTATACGATTGATTCCTCGTGAGCGGAGAACATTTATGTTTTCTGCTACAATGACTAAGAAGGTCCAAAAGCTCCAAAGAGTTTGTTTAAGGAATCCTGTGAAGGTACCCTGTATATTTGCAAATATGTTTAGATTTTAG 339 0.3953 MDYYSQDGGEWNSSYVKKSSRPVGTLGRVLDHLKNTKGFSRNRLKYLVLDEADRLLNEDFEESLNEIIRLIPRERRTFMFSATMTKKVQKLQRVCLRNPVKVPCIFANMFRF* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g2308 112 Gene3D - 10 104 IPR027417 -
Amo02g2308 112 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 102 IPR027417 -
Amo02g2308 112 PANTHER RNA HELICASE 22 104 - -
Amo02g2308 112 Pfam DEAD/DEAH box helicase 22 91 IPR011545 GO:0003676|GO:0005524
Amo02g2308 112 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 102 IPR014001 -
Amo02g2308 112 PANTHER BNAC02G41920D PROTEIN 22 104 - -
Amo02g2308 112 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 48 56 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g2308 Amo-Chr2 74730577 74732495 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g2308 23 102 Eukaryotic Initiation Factors Gene Family AT3G13920 36.250 1.01e-10 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g2308 K14777 - gmx:100775796 144.821