Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g2257 ATGGAACAGGATCAGTGTTGGACGATGCAAGCAAAGAAAAAATTTTCTCTAGGATACAATAATAATCTTATCACCACCAACAACAATGATCGTTCTTCCTATGACGAATCATCATGGGAAGAACAAGCCTTTGCCGAAGACGCGGCCGGTGCCCTTGTTGGTGGATGCATATGGCCGCCAAGATCATATTCTTGCAGCTTTTGTAGGAGAGAGTTTAGGTCAGCTCAGGCTCTTGGTGGCCACATGAATGTTCATAGAAGGGATAGAGCAAGGCTTAAGCAACAACAACCCTCTAGTCCCAACAACAAGAATAGTAATAGTAATAATAATAATGATGAAGTTTTTCAAAGTAATCCTTTCACACCTTTGGGATCATCATATAATACCCTATTATACCCCTCTACTACTTCTTCTACTACTACTCTTTGTGGATTAGCTTTTAAAACTAACCCTAATTCTGATCTTGTTATTCCTTCAGCTTCTTCTTCATCACTACCCTCTACTCCTTCTTCTTCCAAGGCTTTATTATTAGCTACTCCTCCATCATTATTTCCACCACTTTGCAATAATTCTTCTTCTATTCTTCTTCACAAGAATTCCCAAGTCTATTGTTCTCATCCATGGTCAAACTTTGGTGGAGATAATCAAAGGTTGTGTTCTAATAATAAGTTCTTCAACCCTGAAGAAGCTGATGTTGAGAAAGTGATCTCACAAGGTAAGGGAAAAAATGACGAAGGAGAAGAAGAAGACGGCGACGACGACGACCATGATGTGGGTGTGAGCTTGAACTTGGTTGTTTGTAGAAGTCATCATCAATTTGAGGCTAAAGAAGAAGAACATATAAGTTTCAAGAGGAGGAAAACAGAAGCTTCATCAATTCCACCATTTTTACCAAACTCAACAAGCTCAGTTGATAGACATAATCATCATCACATGCATCATCCAAAGATGATTGAATTAAACCCTAGCTCCATTGAAGAGCTAGATCTGGAGTTAAGGCTTGGTAGCTGCAGCTCCGAGGTATAG 1026 0.3957 MEQDQCWTMQAKKKFSLGYNNNLITTNNNDRSSYDESSWEEQAFAEDAAGALVGGCIWPPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLKQQQPSSPNNKNSNSNNNNDEVFQSNPFTPLGSSYNTLLYPSTTSSTTTLCGLAFKTNPNSDLVIPSASSSSLPSTPSSSKALLLATPPSLFPPLCNNSSSILLHKNSQVYCSHPWSNFGGDNQRLCSNNKFFNPEEADVEKVISQGKGKNDEGEEEDGDDDDHDVGVSLNLVVCRSHHQFEAKEEEHISFKRRKTEASSIPPFLPNSTSSVDRHNHHHMHHPKMIELNPSSIEELDLELRLGSCSSEV* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g2257 341 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 1 338 - -
Amo02g2257 341 MobiDBLite consensus disorder prediction 79 118 - -
Amo02g2257 341 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 90 IPR013087 -
Amo02g2257 341 Pfam C2H2-type zinc finger 63 87 - -
Amo02g2257 341 SMART c2h2final6 63 85 IPR013087 -
Amo02g2257 341 PANTHER OS07G0101800 PROTEIN 1 338 - -
Amo02g2257 341 SUPERFAMILY beta-beta-alpha zinc fingers 60 89 IPR036236 -
Amo02g2257 341 MobiDBLite consensus disorder prediction 278 311 - -
Amo02g2257 341 MobiDBLite consensus disorder prediction 233 256 - -
Amo02g2257 341 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Amo02g2257 341 Gene3D Classic Zinc Finger 60 118 - -
Amo02g2257 341 MobiDBLite consensus disorder prediction 94 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g2257 Amo-Chr2 73855411 73856894 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g2257 31 194 C2H2 Transcription Factor Family AT2G37740 42.012 4.17e-28 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g2257 - - adu:107475041 556.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2069 12 96866278 96867775 Amo02g2257 02 73855411 73856894 hybridization