Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g2243 ATGGTGGAGGATATTTGGAACCTGGAGTTTAGGATAGAGGATGAGGCTTGCCAATTTTATAACGCTTATGCTTGTTGGCATGGATTTGTAATGAGGAAGGACGACGTGGTTAGGGATAATCAAGGTAGAATCATTAGCAGGCAACTTGTTTGCAATAAGGAGGGCTGGAGGAATATGAGGTATCTTGATCTGGATGATAGATCAAGGGAGGCAAGGTCACTAACGCGAACCAAGTGTCCAGCTCGGCTTAGGAACACCCTCATTGACTTCATGCATAACCTGGATAGGGCCTTAAAGGAGTATAGAAACAATGAATTAATAGCTGACTTTAAGTCTCAGTGCTCAGAGCCAGTGATGATTACCTCGTTGGAGAGGGCAGGGGCTTTGAATATCAAGGTACTAAGCACAACCTTGGACAAGGTAGAGTTCAGTGTGACTGCTCTCGGAGACCCGGCCAAAGATCGACGGGTGGAAGTCGATAGAAGTAAGAATCTGTTCTCGTGCTCGTGCAAGCTGTTTGAATCACGTGGTATTCCCTGTAGTCATGTTTTCTGTGCCATGAAGTTCGAAAACATACTTGAGTTTTCAGATTCGTTGATCTACAAAAGGTGGACAAAGAATGCAAAGAACGAATTTATTAGCACAGAAATGCCTGTGAATGATGACGTCGAAAGGGTCTTAAAGTTTCGAGTTGGTGCATTGGCATCGAATTGCAACAAGCTGTGTGATATTGCTTGCAAGGATCTTGCAGACTTTGATGAAGTCCAGTCTGAACTTGTCAAGTTAGTTATCCGCCTGCAGTCACGCAAACAAGGCAAGTCAACTCCTAATGTTAACGTGGAAGGCATCAACGATCCCTTTGTTGTCAAAAGCAAAGGAGCCCCTTCCAAAAGGTCTTCTTGGAGGAAGAAGAGAGCATGCTCTAATTGCCACAAGTACGGTCATTACTACAAGCGCTGTCCAGATCTGATGCAGCATAGTGTGGAAGGTAACCCTTGCGATCGATCAGACGGCAATGCATCAGCCAAGGACTCAGGTTTTAGTCCAGAAAGGTTTGCTAATTCTTCGAGGTCGTTCTCAGTTAAGTCCGAACACCATTCAGGACCTAAGACCAAGGTACGATTTGTTTATTCTAACTAA 1140 0.4456 MVEDIWNLEFRIEDEACQFYNAYACWHGFVMRKDDVVRDNQGRIISRQLVCNKEGWRNMRYLDLDDRSREARSLTRTKCPARLRNTLIDFMHNLDRALKEYRNNELIADFKSQCSEPVMITSLERAGALNIKVLSTTLDKVEFSVTALGDPAKDRRVEVDRSKNLFSCSCKLFESRGIPCSHVFCAMKFENILEFSDSLIYKRWTKNAKNEFISTEMPVNDDVERVLKFRVGALASNCNKLCDIACKDLADFDEVQSELVKLVIRLQSRKQGKSTPNVNVEGINDPFVVKSKGAPSKRSSWRKKRACSNCHKYGHYYKRCPDLMQHSVEGNPCDRSDGNASAKDSGFSPERFANSSRSFSVKSEHHSGPKTKVRFVYSN* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g2243 379 PANTHER OS03G0181600 PROTEIN 141 263 - -
Amo02g2243 379 MobiDBLite consensus disorder prediction 348 362 - -
Amo02g2243 379 SUPERFAMILY Retrovirus zinc finger-like domains 293 325 IPR036875 GO:0003676|GO:0008270
Amo02g2243 379 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 7 83 IPR031052 GO:0006355
Amo02g2243 379 MobiDBLite consensus disorder prediction 334 379 - -
Amo02g2243 379 ProSiteProfiles Zinc finger CCHC-type profile. 307 322 IPR001878 GO:0003676|GO:0008270
Amo02g2243 379 ProSiteProfiles Zinc finger SWIM-type profile. 155 191 IPR007527 GO:0008270
Amo02g2243 379 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 141 263 IPR031052 GO:0006355
Amo02g2243 379 SMART 26again6 166 193 IPR006564 GO:0008270
Amo02g2243 379 Pfam FAR1 DNA-binding domain 18 86 IPR004330 -
Amo02g2243 379 PANTHER OS03G0181600 PROTEIN 7 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g2243 Amo-Chr2 73426899 73428961 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo02g2243 FAR1 1.3e-11 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g2243 - - aip:110271907 558.14