Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g2224 ATGGCAATTTTTTCTAAGCTCTTCCACAAGCTTTGTTACAAAATCATAATCCTATTGGCATTCCTTCTYACTGAAATAATCATCCTCATCAGGAAGCTAAAATCATCATCATATACAGGTCCAATCACAACAAAGAAGTACCTCAGATTCATCGAAGAGAAGAACCCAACAATTTGCTACAGCAAGAAGAGTAGTAAGTTATTGAAGCTGAAACCGCCACGGCACGTGGAGTGCACGCTATGCTTGTCGGAGTTCATGGAAGGGGAGAAGCTGAGGAGTCTGAAATGCCAACACACGTTTCACAGGGATTGCTTAGACACATGGCTCAAAGACTACTGCGCCACGTGTCCTTTGTGTAGGTTAAAAGTGGTGTCCGATGATGTTGTTTCCCAYCACCGTGAGCTTAGAAAGCAAGCTGATTCTAACGGTAACGGTGAACAGCTAACGTATTTTTTAGCCGTGTTACGTGGCGGTAACACTTTGCAAAGTTAG 492 0.4309 MAIFSKLFHKLCYKIIILLAFLLTEIIILIRKLKSSSYTGPITTKKYLRFIEEKNPTICYSKKSSKLLKLKPPRHVECTLCLSEFMEGEKLRSLKCQHTFHRDCLDTWLKDYCATCPLCRLKVVSDDVVSHHRELRKQADSNGNGEQLTYFLAVLRGGNTLQS* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g2224 163 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 160 - -
Amo02g2224 163 PANTHER - 4 160 - -
Amo02g2224 163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 125 IPR013083 -
Amo02g2224 163 Pfam Ring finger domain 77 120 IPR001841 -
Amo02g2224 163 CDD mRING-H2-C3H2C2D_ZSWM2 77 120 - -
Amo02g2224 163 SUPERFAMILY RING/U-box 77 126 - -
Amo02g2224 163 ProSiteProfiles Zinc finger RING-type profile. 78 120 IPR001841 -
Amo02g2224 163 SMART ring_2 78 119 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g2224 Amo-Chr2 73097019 73097805 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g2224 77 130 C3H Transcription Factor Family AT1G15100 53.704 2.49e-16 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g2224 K16282 - gmx:102668078 177.948